PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462958363

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 288aa MW: 31835.9 Da PI: 8.4238

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462958363	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	42	64	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f+ C++Gd C FaHg 462958363 42 VPCASFRLADGCPRGDACDFAHG 64 68888888889***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.75E-5	38	67	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.61	38	66	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-6	38	66	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.9E-4	71	102	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MFRFKVQPCA RAYAHDWTEC PFLHPGENAR RRDPRRHAYT AVPCASFRLA DGCPRGDACD 60 FAHGVFESWL HPTQYRTRLC RDGAACARRI CFFAHAEGEL RRAPRDDEDD VLLSPRGAAA 120 DDMAALGMLP PPAHWLQQGG GSSAFSASLL DAQVDDLGSL LDLASLGRPQ PRLSRRHPAF 180 PPHPPTYMAL PPSRFCNDDH GGSAYYSPEA AKTSHLLARI RQQQQGLRLA PAVVQRQACD 240 RSFPSLNKKQ QQQMLSPVAA PPLPTWGYSD ASWINSGAPN GKIDWSFP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462958363

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460875.1	1e-72	zinc finger CCCH domain-containing protein 50
Swissprot	Q84SL2	5e-73	C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBL	A0A0E0LMD3	3e-74	A0A0E0LMD3_ORYPU; Uncharacterized protein
STRING	OPUNC07G18060.1	4e-75	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-50	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]