PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462958363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 288aa MW: 31835.9 Da PI: 8.4238 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 42 | 64 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f+ C++Gd C FaHg 462958363 42 VPCASFRLADGCPRGDACDFAHG 64 68888888889***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.75E-5 | 38 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.61 | 38 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-6 | 38 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 71 | 102 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MFRFKVQPCA RAYAHDWTEC PFLHPGENAR RRDPRRHAYT AVPCASFRLA DGCPRGDACD 60 FAHGVFESWL HPTQYRTRLC RDGAACARRI CFFAHAEGEL RRAPRDDEDD VLLSPRGAAA 120 DDMAALGMLP PPAHWLQQGG GSSAFSASLL DAQVDDLGSL LDLASLGRPQ PRLSRRHPAF 180 PPHPPTYMAL PPSRFCNDDH GGSAYYSPEA AKTSHLLARI RQQQQGLRLA PAVVQRQACD 240 RSFPSLNKKQ QQQMLSPVAA PPLPTWGYSD ASWINSGAPN GKIDWSFP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462958363 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460875.1 | 1e-72 | zinc finger CCCH domain-containing protein 50 | ||||
Swissprot | Q84SL2 | 5e-73 | C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50 | ||||
TrEMBL | A0A0E0LMD3 | 3e-74 | A0A0E0LMD3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G18060.1 | 4e-75 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 1e-50 | C3H family protein |
Publications ? help Back to Top | |||
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