PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958228
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 69aa    MW: 8136.47 Da    PI: 10.8077
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958228genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.4e-122168448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     W   E+e l ++v q+G+g+Wk I +  +    gRt+ ++k++w++ +
        462958228 21 WCVLEEETLRKGVVQYGSGNWKDILANNPdvfIGRTPVDLKDKWRNMM 68
                     6666*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-141169IPR009057Homeodomain-like
PROSITE profilePS5129416.0821369IPR017930Myb domain
SuperFamilySSF466891.94E-151568IPR009057Homeodomain-like
CDDcd116609.01E-171969No hitNo description
PfamPF002496.0E-102067IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MPVSPLQPPE NKNKRRKARK WCVLEEETLR KGVVQYGSGN WKDILANNPD VFIGRTPVDL  60
KDKWRNMMR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958228
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811007.18e-37uncharacterized protein LOC112888859
TrEMBLA0A0A9NEY31e-37A0A0A9NEY3_ARUDO; Uncharacterized protein
TrEMBLA0A2S3HLA82e-35A0A2S3HLA8_9POAL; Uncharacterized protein
STRINGPavir.J08903.1.p2e-37(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-12MYB_related family protein