PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462957976 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 396aa MW: 43624.2 Da PI: 11.7482 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.6e-13 | 141 | 188 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 y+GV++++ +g++ A+I + + + k+++lg+++t eeAa a++aa + l+ 462957976 141 YRGVTRRP-SGKYGAYIFEsF-----ThKKVWLGTYDTREEAACAYDAASRTLR 188 9*******.7******99966.....56*********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-9 | 140 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.122 | 140 | 197 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-21 | 140 | 203 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-16 | 140 | 197 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.19E-17 | 140 | 198 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-20 | 140 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-7 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-7 | 163 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MLEIESPRAA GREREPQAQL GGNARVVRAR RPASAPRRAR ARTPAARAQR EQSERAEQEP 60 ADAAPAAART ARSQAASAAR AAREAEEEQP RQRRTPAPPR GVARGEGGPA GRGGAGSVRQ 120 EGGGEWRAAG GAAAPAPERN YRGVTRRPSG KYGAYIFESF THKKVWLGTY DTREEAACAY 180 DAASRTLRPH ATKTNFPEPA GEEETRLAVV SAHVDGVKRR REEKMQQKEA RRKMDADNAA 240 ATAPPPDDVQ PPPAPAPXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXASQP 300 APAPAGEAFE SQTAPAPLGV SSIRLFGVDV VVAPQRRTGS HNRWHLHRRL LPRLRRFLVV 360 SLVKHLMQVE MDTGRGVHDN AWWWSTVGRR RKQRRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-12 | 130 | 197 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462957976 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19719 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-15 | ERF domain protein 12 |