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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462957652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | CAMTA | ||||||||
Protein Properties | Length: 378aa MW: 41946.6 Da PI: 6.6152 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.4 | 2.1e-56 | 57 | 174 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een++fqrr+yw 462957652 57 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENENFQRRSYW 156 45559*********************************************************************************************** PP CG-1 101 lLeeelekivlvhylevk 118 +Lee++ +ivlvhylevk 462957652 157 MLEEDFMHIVLVHYLEVK 174 ***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 83.23 | 53 | 179 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 7.6E-78 | 56 | 174 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.9E-50 | 59 | 173 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
NPAEKSGPAS RRSPSSARLH ARCLVPVCSA RARRSVSAMA EGRRYAIAPQ LDVQQILKEA 60 QHRWLRPAEI CEILKNYRNF RIAPEPPNRP PSGSLFLFDR KVLRYFRKDG HNWRKKRDGK 120 TVKEAHERLK SGSIDVLHCY YAHGEENENF QRRSYWMLEE DFMHIVLVHY LEVKGGKSSS 180 RIRGHDDMLQ AARTDSPLSH LPSQTTEGES SLSGQASEYE ETESADIYSG GAGYHPFSWA 240 QQHENGGGPL IGASIMSSYI PAPSVANHQG LPATTANTGF YSHGEDNLPV YHDESGVVAF 300 NGADSQLNFS SLDGVMKPDN RIHQMSLPQV STPSEQFSLT EGPGIESFTF DEIYSNGLSI 360 KDADGAGTDE GSLWQVLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462957652 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985392.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | A0A368SUT7 | 0.0 | A0A368SUT7_SETIT; Uncharacterized protein | ||||
STRING | Traes_4DL_C2F35966E.2 | 0.0 | (Triticum aestivum) | ||||
STRING | GRMZM2G447551_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 1e-78 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |