PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956461
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 388aa    MW: 42278.7 Da    PI: 5.1922
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956461genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY346.1e-11144166123
                ---SS-EEEEEEE--TT-SS-EE CS
       WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                ldDgy+WrKYG+K+vk+s++pr 
  462956461 144 LDDGYRWRKYGKKMVKNSPNPRT 166
                59*******************95 PP
2WRKY93.12.1e-29316374159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ve +++d+++v++tY g Hnh+
  462956461 316 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCHVKKRVEWERDDERFVITTYDGVHNHP 374
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-11130166IPR003657WRKY domain
SuperFamilySSF1182906.8E-9137166IPR003657WRKY domain
PROSITE profilePS5081113.483139166IPR003657WRKY domain
SMARTSM007741.5E-5144179IPR003657WRKY domain
PfamPF031061.6E-6145166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-32302375IPR003657WRKY domain
SuperFamilySSF1182906.28E-27309375IPR003657WRKY domain
PROSITE profilePS5081130.526311376IPR003657WRKY domain
SMARTSM007749.7E-35316375IPR003657WRKY domain
PfamPF031061.4E-23317374IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSSSYSSLLS PCPADWGAGD SEAMEAADVS SYLSFDVAQE CYYHSPEAAA AAFHSECQGL  60
LGALQEDDVD YSVMSGEAGS NGGREASERS QTDASTVVTP ARLLAIRDTM INEVMSSGDD  120
GRMSLPTGRR GRIAFKTRSD VEVLDDGYRW RKYGKKMVKN SPNPRTIVDG GFRVTLYSSL  180
LLRYGNGGDA EAMAAAAAVS SYLSFAADVP EECYYHSPEA AVAAAFHSER QGLLGALQED  240
DVDYSVMSGE AGSNGGREAS EQSQTDASTV LRPAGLAIRD TMINEGVSSG DDGRMSLPTG  300
RRGRIAFKTR SDVEVLDDGY RWRKYGKKMV KNSPNPRNYY RCSSEGCHVK KRVEWERDDE  360
RFVITTYDGV HNHPAVPLAP HHRRPINL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22300373174Probable WRKY transcription factor 4
2lex_A2e-22300373174Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462956461
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274033e-62KR827403.1 Triticum aestivum WRKY52 transcriptional factor mRNA, complete cds.
GenBankKT7289093e-62KT728909.1 Triticum aestivum clone LKc001 WRKY protein mRNA, partial cds.
GenBankKT7289103e-62KT728910.1 Triticum aestivum clone LKc002 WRKY protein mRNA, partial cds.
GenBankKT8658773e-62KT865877.1 Triticum aestivum clone KL04 WRKY mRNA, partial cds.
GenBankKT8658783e-62KT865878.1 Triticum aestivum clone KL05 WRKY mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969405.16e-51probable WRKY transcription factor 50
TrEMBLK3XLT91e-49K3XLT9_SETIT; Uncharacterized protein
STRINGSi002862m2e-50(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-38WRKY DNA-binding protein 50