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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462955651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WRKY | ||||||||
Protein Properties | Length: 131aa MW: 14568.4 Da PI: 10.9088 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96 | 2.5e-30 | 67 | 125 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs+fpr+YYrC+s gCp++k+ver+a dp ++++tYe +H+h+ 462955651 67 ADEWSWRKYGQKPIKGSPFPRGYYRCSSVkGCPARKHVERDAADPATLIVTYEADHRHD 125 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-32 | 58 | 126 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.215 | 61 | 127 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 62 | 125 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 66 | 126 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-25 | 68 | 124 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MGRGEARKID PSSFKFKGYD SQKSSQPNPK HKPRRRKNHH RVDPSRLSSA AATRGGVGAS 60 SRADIPADEW SWRKYGQKPI KGSPFPRGYY RCSSVKGCPA RKHVERDAAD PATLIVTYEA 120 DHRHDAAALK A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-22 | 56 | 128 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-22 | 56 | 128 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 36 | PRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462955651 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004648 | 6e-70 | AP004648.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_H02. | |||
GenBank | AP014964 | 6e-70 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT835958 | 6e-70 | CT835958.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI102B05, full insert sequence. | |||
GenBank | CT835959 | 6e-70 | CT835959.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI103A11, full insert sequence. | |||
GenBank | CT841936 | 6e-70 | CT841936.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103L12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151725.2 | 4e-35 | uncharacterized protein LOC100285361 | ||||
Swissprot | Q6IEN1 | 1e-33 | WRK51_ORYSI; WRKY transcription factor WRKY51 | ||||
TrEMBL | K7TVL8 | 8e-34 | K7TVL8_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | Pavir.Fb01342.1.p | 2e-36 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 2e-35 | WRKY DNA-binding protein 11 |