PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462955422

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 433aa MW: 46542.3 Da PI: 8.0157

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462955422	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.3	8.8e-07	148	191	1	45
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 +fYn Y+ e+GF +r +++ k+ ++itk++ +Cs++ r ++ 462955422 148 EFYNLYSWELGFGIRWNRNAKN-SGKSITKQDICCSCQKPRVKKG 191 6***************9999.7777*******998776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50966	9.223	249	285	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MASIPAGDDG LRARAELSRR AGDVSGATAA APDVRSEGVS GAVPRAMFTE GVGGGGLASG 60 GGGTEGAQDR GPASNGGGSV QAVGSGGAQG SGWVRRPRFG SIPDERVPQA GRVSAYEQSL 120 RNYAEKKSSV VMNPAVGTSF DSRAEAYEFY NLYSWELGFG IRWNRNAKNS GKSITKQDIC 180 CSCQKPRVKK GVPIEEHAAK VYTRAMFEKF GETIFESGSY VVDEKEKGKA YSVRHIRSDH 240 QESWSQLEFQ VIIRAEDRAV ICECGLGKHM GMPCCHAVKV MIHLGMQEIP SGNIVRRWTR 300 NARDISLDHL IEHQEDMTPG MLRALKYAAL YVAAMEVVNL GLSSNHAFEI AMTGLTQAKQ 360 QVLESSRVKD GIGLAEQRCP SAEQGSDPSS DVQDVSAVTT DDGTSAAQKL SLETKVSGRK 420 RKLLSHMQAD NPQ

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MASIPAGDDG LRARAELSRR AGDVSGATAA APDVRSEGVS GAVPRAMFTE GVGGGGLASG  60
GGGTEGAQDR GPASNGGGSV QAVGSGGAQG SGWVRRPRFG SIPDERVPQA GRVSAYEQSL  120
RNYAEKKSSV VMNPAVGTSF DSRAEAYEFY NLYSWELGFG IRWNRNAKNS GKSITKQDIC  180
CSCQKPRVKK GVPIEEHAAK VYTRAMFEKF GETIFESGSY VVDEKEKGKA YSVRHIRSDH  240
QESWSQLEFQ VIIRAEDRAV ICECGLGKHM GMPCCHAVKV MIHLGMQEIP SGNIVRRWTR  300
NARDISLDHL IEHQEDMTPG MLRALKYAAL YVAAMEVVNL GLSSNHAFEI AMTGLTQAKQ  360
QVLESSRVKD GIGLAEQRCP SAEQGSDPSS DVQDVSAVTT DDGTSAAQKL SLETKVSGRK  420
RKLLSHMQAD NPQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462955422

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002459424.2	6e-66	protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A0A9R7V7	1e-102	A0A0A9R7V7_ARUDO; Uncharacterized protein
TrEMBL	A0A2T7ELD8	1e-102	A0A2T7ELD8_9POAL; Uncharacterized protein
STRING	Pavir.Ba03654.1.p	9e-94	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	4e-13	FAR1-related sequence 12