PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462955182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 168aa MW: 19248.8 Da PI: 9.4529 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.3e-17 | 11 | 97 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvfrk 99 ++r+v++kk+a +h +++s+++tl+ + + ++W+ ++ y+++++r ++l++ W +Fv +n+++ gD+++F + gr++f+++v ++r+ 462955182 11 NCRIVISKKYAFTHF--PHKSMDVTLQRPGNsKKWQPRF-YKRNDNRlCMLKGQWLDFVCDNHVQKGDICLFLPIkGRRKFTFMVYLLRT 97 79*********9997..56899******5555*******.88888888*************************77355*******99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 3.44E-19 | 1 | 93 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-16 | 1 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.575 | 1 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-5 | 1 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-17 | 2 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.4E-15 | 11 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MTKSTIGDAI NCRIVISKKY AFTHFPHKSM DVTLQRPGNS KKWQPRFYKR NDNRLCMLKG 60 QWLDFVCDNH VQKGDICLFL PIKGRRKFTF MVYLLRTSAS GSSRVETGFE RTGPHYGRSS 120 TKMASTVHIK EESTEGENVS MENGKHETSE EYQESDSGIN VSMENGMH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462955182 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679276.1 | 1e-50 | B3 domain-containing protein Os03g0619600 | ||||
Refseq | XP_022685401.1 | 8e-51 | B3 domain-containing protein Os03g0619800-like, partial | ||||
Swissprot | Q6AV22 | 9e-38 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A3L6TPZ3 | 4e-50 | A0A3L6TPZ3_PANMI; B3 domain-containing protein | ||||
TrEMBL | K4AJW8 | 9e-50 | K4AJW8_SETIT; Uncharacterized protein | ||||
STRING | Si039191m | 2e-50 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Publications ? help Back to Top | |||
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