PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954788
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 754aa    MW: 81595.2 Da    PI: 6.1844
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954788genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.32e-11100140141
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 
                +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ 
  462954788 100 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 140
                688999*********************************86 PP
2START198.33.5e-622855031206
                HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECTT.. CS
      START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlevissg.. 88 
                ela +a++elv++a++++p+W   +   +++++e+ + f+ + +      + ea+r+s+vv+m+  +lve+l+d ++    ++  + +a++++ +ssg  
  462954788 285 ELAVAAMDELVRMAQLDAPLWGMGPagVQLDEEEYARMFPGGIGprqygLRAEASRDSAVVIMTRDRLVEILMDANRfasVFSSIVSRASVHDLLSSGva 384
                57899**********************************88888********************************77777788888************* PP

                ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
      START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                    galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg++i++++ng+skvtwvehv++++r++h+++++
  462954788 385 gsynGALQVMSMEFQVPSPLVPtRESYFVRYCKHNPDGTWAVVDVSLDSLRPGP----VLKCRRRPSGCIIQEMPNGYSKVTWVEHVEVDDRSVHNIYKP 480
                *****************************************************9....7***************************************** PP

                HHHHHHHHHHHHHHHHTXXXXXX CS
      START 184 lvksglaegaktwvatlqrqcek 206
                lv+sgla+gak+wv tl+rqce+
  462954788 481 LVNSGLAFGAKRWVGTLDRQCER 503
                *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-984142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1386142IPR009057Homeodomain-like
SMARTSM003895.0E-498162IPR001356Homeobox domain
PfamPF000464.8E-9100140IPR001356Homeobox domain
CDDcd000862.41E-10100142No hitNo description
PROSITE profilePS5084838.595276506IPR002913START domain
SuperFamilySSF559613.24E-33277505No hitNo description
CDDcd088757.33E-117280502No hitNo description
SMARTSM002346.7E-57285503IPR002913START domain
PfamPF018522.1E-51286503IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-6378502IPR023393START-like domain
SuperFamilySSF559611.1E-12525642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MTPARRMPAM IGRNGVAYGS SSALSLNQVD LLDNQHLQQA FQQQLFDQIP AAGVDSGDNM  60
IHGHADTLAD EFESKSCSEN PDGTSGDDGQ EDPNQRPNKK KRYHRHTQHQ IQEMEAFFKE  120
CPHPDDKQRK ELSRELGLEP LQNQHERQEN AQLRAENDKL RSENLRYKEA LSTASCPSCG  180
GPAALGEMSF DEHHLRIENA RLHDEIDRIS GIAAKHVGKP MVSFPVLSSP LAAAAARSPL  240
DLAGAYGVQP PSLAADIFGV GAGAGELLRN VSTGQLDADK PMIIELAVAA MDELVRMAQL  300
DAPLWGMGPA GVQLDEEEYA RMFPGGIGPR QYGLRAEASR DSAVVIMTRD RLVEILMDAN  360
RFASVFSSIV SRASVHDLLS SGVAGSYNGA LQVMSMEFQV PSPLVPTRES YFVRYCKHNP  420
DGTWAVVDVS LDSLRPGPVL KCRRRPSGCI IQEMPNGYSK VTWVEHVEVD DRSVHNIYKP  480
LVNSGLAFGA KRWVGTLDRQ CERLASVMAS NIPNGDLGVI TSIEGRKSML KLAERMVASF  540
CGGVTASAAH QWTTLSGSGA EDVRVMTRKS VDDPGRPPGI VLNAATSFWI PVSPKRVFDF  600
LRDETSRSEW DILSNGGAVQ EMAHIANGRD HGNCVSLLRV NVSSLNKTYS FERIHYLIAS  660
QFSLVELICG RCGNECGAQR RGPRLCGSDG PPGAAADGEN PAGGGALLTV AFQILVDSVP  720
TAKLSLGSVA TVNSLIACTV ERIKAAICVE ANPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954788
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972697.10.0homeobox-leucine zipper protein ROC1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLK3YGB70.0K3YGB7_SETIT; Uncharacterized protein
STRINGSi013285m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]