PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462954725 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 152aa MW: 16921.2 Da PI: 9.5951 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.4e-15 | 62 | 141 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k++t+s+v+ +l lp +f+++h kk + +tl +e+ + +e + ++++ l++GW++F +n+L +gD +vF+l++ 462954725 62 FVKAMTQSHVTGGFWLGLPIDFCRKHLPKK--DEHITLVNEDDELFETLY--LASKRG--LSAGWRGFSIQNNLVDGDCLVFELTE 141 89************************5443..446***************..666666..9**********************864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-21 | 56 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-17 | 56 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.17E-21 | 60 | 141 | No hit | No description |
PROSITE profile | PS50863 | 10.532 | 62 | 152 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-13 | 62 | 151 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-13 | 62 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MCSEGPAASP TFHRSPSTAR SSGRGRRTDL DNRVYATEAA RTYAINKAEK LEKGLKSRSP 60 RFVKAMTQSH VTGGFWLGLP IDFCRKHLPK KDEHITLVNE DDELFETLYL ASKRGLSAGW 120 RGFSIQNNLV DGDCLVFELT EPRIFKGLGG MS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462954725 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001136712.1 | 3e-57 | uncharacterized LOC100216848 | ||||
Refseq | XP_008676667.1 | 3e-57 | uncharacterized protein LOC100216848 isoform X1 | ||||
Swissprot | Q69V36 | 3e-53 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A1D6PU23 | 2e-56 | A0A1D6PU23_MAIZE; B3 domain-containing protein | ||||
TrEMBL | A0A3L6F2J4 | 1e-55 | A0A3L6F2J4_MAIZE; B3 domain-containing protein | ||||
TrEMBL | B4FK06 | 8e-56 | B4FK06_MAIZE; ABI3VP1 transcription factor | ||||
TrEMBL | C0P906 | 2e-56 | C0P906_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G106673_P02 | 1e-56 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 5e-44 | B3 family protein |
Publications ? help Back to Top | |||
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