PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954451
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 356aa    MW: 38629.6 Da    PI: 6.5217
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954451genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.83.8e-1358922256
               SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +++p+ ++r++L+++lgL+  q+k+WFqN+R+++k
  462954451 58 HPHPDDKQRKQLSRELGLEPLQIKFWFQNKRTQMK 92
               799*****************************999 PP
2START53.29.1e-18192305193
                HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
      START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                ela +a++elv++a ++ep+Wv  +       e +n++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW + +     +a+tlev
  462954451 192 ELAVAAMEELVRMAHLGEPLWVPAVaddsvaaEVLNEEEYARSFPRGVGpkspeLRSEASRETVVVIMNHMSLVEMLMDVN-QWWTLFStivsRASTLEV 290
                57899******************999*99***************99777********************************.88777777777******* PP

                ECTT......EEEEE CS
      START  85 issg......galql 93 
                +s+g      galq 
  462954451 291 LSTGvagnynGALQI 305
                ****77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.9E-45198IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-1457101IPR009057Homeodomain-like
CDDcd000862.92E-105895No hitNo description
PfamPF000461.3E-105892IPR001356Homeobox domain
PROSITE profilePS5007112.5525894IPR001356Homeobox domain
SuperFamilySSF466891.55E-1158102IPR009057Homeodomain-like
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PROSITE profilePS5084813.724183294IPR002913START domain
PfamPF018523.2E-11193305IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEGGGGSGSA GEELQEDLRR RRLGLCWRGA AGGPQRAAPP QETLSPPHPA PDPGAGSHPH  60
PDDKQRKQLS RELGLEPLQI KFWFQNKRTQ MKTQQERHEN SHLRAENEKL RAENARYRDA  120
LANATCPSCG GPATAAIGEM SFDEQQLRLE NARLRDEIDR ISSIAAKYVG KSAGAGGSSS  180
ISSARGLPLV IELAVAAMEE LVRMAHLGEP LWVPAVADDS VAAEVLNEEE YARSFPRGVG  240
PKSPELRSEA SRETVVVIMN HMSLVEMLMD VNQWWTLFST IVSRASTLEV LSTGVAGNYN  300
GALQIVRSRR FWISYNLHLL FAKELSRGAD VCGVPDAVAA GADAGEPVRA LLQAAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954451
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319954.11e-136homeobox-leucine zipper protein ROC7 isoform X2
SwissprotA2YR021e-126ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
SwissprotA3BPF21e-126ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLA0A1D6J1261e-133A0A1D6J126_MAIZE; Homeodomain leucine zipper family IV protein
TrEMBLC5YMY21e-131C5YMY2_SORBI; Uncharacterized protein
TrEMBLQ8W0T51e-131Q8W0T5_SORBI; OCL5 protein
STRINGPavir.Fb00210.1.p1e-133(Panicum virgatum)
STRINGSb07g002780.11e-132(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-103protodermal factor 2