PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954358
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 689aa    MW: 73683.7 Da    PI: 10.1174
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954358genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07136161227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C  +     Ck+G++C+FaHg+
  462954358 136 KTRMCTKYNTAEGCKFGEKCHFAHGE 161
                9***********************96 PP
2zf-CCCH35.51.7e-11306331127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC +f + GtC +G+rC+FaHg+
  462954358 306 YKTKLCENFVK-GTCTFGERCHFAHGE 331
                9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.46895IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8596896IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-67093IPR000571Zinc finger, CCCH-type
PfamPF146081.37693No hitNo description
SMARTSM003560.27134161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7134165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45134162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-12136166IPR000571Zinc finger, CCCH-type
PfamPF146080.15140160No hitNo description
Gene3DG3DSA:3.30.1370.101.2E-13203273IPR004088K Homology domain, type 1
SMARTSM003221.2E-10203273IPR004087K Homology domain
PROSITE profilePS5008414.739204268IPR004088K Homology domain, type 1
SuperFamilySSF547911.09E-13205300IPR004088K Homology domain, type 1
PfamPF000136.9E-10206268IPR004088K Homology domain, type 1
CDDcd001057.68E-13206268No hitNo description
SuperFamilySSF902298.9E-9304335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-14304335IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-8305331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.272305332IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9306331IPR000571Zinc finger, CCCH-type
PfamPF047551.2E-7478662IPR006843Plastid lipid-associated protein/fibrillin conserved domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
TRPTPSQSFL LRRRPSQSRA RVPARLFQTR GPAMEGVAAR KRSRPETANG GSVGGKRSKD  60
TEFQTGLSSK SKPCTKFFST IGCPFGEGCH FSHFIPGGYP AVAKMLNLGS PTVSAPSRGP  120
VDHAAVANSH PASTGKTRMC TKYNTAEGCK FGEKCHFAHG ERELGKPAYM SHHEGPPMGG  180
RFGGRPEPRQ PSAMGPPAGS FGASATAKIS VDASLAGGII GKGGVNTKQI SRVTGVKLSI  240
RDHESDPNLK NIELEGNFDQ IKQASNMVGE LIATISANMP VKNPSGPTAP AGRGGGGGGS  300
GGRSNYKTKL CENFVKGTCT FGERCHFAHG ESEQRRGPYD VSRTCDCPAL QAALLPLQQL  360
GTTTTTAIQS TREKSVSQAR LFRLSRMAAA VALTPASPAL LPSLRCREHG RVRLSARRPR  420
HAAGRCRATA QTATAQTFQG GPAASYAREM ERLSAKESLL LAFKDAGGFQ ALVSGKTTEI  480
QRIDVNERIV GLERLNPTPR PTTSPFLEGR WNFEWFGDSS PGAFAARLLF ERSPTTVAHF  540
KGLDVLIKDG YAKISSDLKF LNTIQSKFLL TTQLSVEGPI RMKEEYVEGL IEIPKISEES  600
MPEQLKGLIG QAAGALQQLP SPIRDAASEG LKLPLGGTFQ RLFMISYLDE EILIIRDAAG  660
APDVLTRLEG PQPNPVDGTA DAVISEYES
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0915850.0FP091585.1 Phyllostachys edulis cDNA clone: bphylf027i18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VYA00.0A0A1E5VYA0_9POAL; Zinc finger CCCH domain-containing protein 31
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP998022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-48C3H family protein