PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462954358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 689aa MW: 73683.7 Da PI: 10.1174 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.6e-07 | 136 | 161 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+G++C+FaHg+ 462954358 136 KTRMCTKYNTAEGCKFGEKCHFAHGE 161 9***********************96 PP | |||||||
2 | zf-CCCH | 35.5 | 1.7e-11 | 306 | 331 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +G+rC+FaHg+ 462954358 306 YKTKLCENFVK-GTCTFGERCHFAHGE 331 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.4 | 68 | 95 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.859 | 68 | 96 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-6 | 70 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.3 | 76 | 93 | No hit | No description |
SMART | SM00356 | 0.27 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-7 | 134 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.45 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-12 | 136 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.15 | 140 | 160 | No hit | No description |
Gene3D | G3DSA:3.30.1370.10 | 1.2E-13 | 203 | 273 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.2E-10 | 203 | 273 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.739 | 204 | 268 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 1.09E-13 | 205 | 300 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 6.9E-10 | 206 | 268 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 7.68E-13 | 206 | 268 | No hit | No description |
SuperFamily | SSF90229 | 8.9E-9 | 304 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-14 | 304 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-8 | 305 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.272 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-9 | 306 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04755 | 1.2E-7 | 478 | 662 | IPR006843 | Plastid lipid-associated protein/fibrillin conserved domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
TRPTPSQSFL LRRRPSQSRA RVPARLFQTR GPAMEGVAAR KRSRPETANG GSVGGKRSKD 60 TEFQTGLSSK SKPCTKFFST IGCPFGEGCH FSHFIPGGYP AVAKMLNLGS PTVSAPSRGP 120 VDHAAVANSH PASTGKTRMC TKYNTAEGCK FGEKCHFAHG ERELGKPAYM SHHEGPPMGG 180 RFGGRPEPRQ PSAMGPPAGS FGASATAKIS VDASLAGGII GKGGVNTKQI SRVTGVKLSI 240 RDHESDPNLK NIELEGNFDQ IKQASNMVGE LIATISANMP VKNPSGPTAP AGRGGGGGGS 300 GGRSNYKTKL CENFVKGTCT FGERCHFAHG ESEQRRGPYD VSRTCDCPAL QAALLPLQQL 360 GTTTTTAIQS TREKSVSQAR LFRLSRMAAA VALTPASPAL LPSLRCREHG RVRLSARRPR 420 HAAGRCRATA QTATAQTFQG GPAASYAREM ERLSAKESLL LAFKDAGGFQ ALVSGKTTEI 480 QRIDVNERIV GLERLNPTPR PTTSPFLEGR WNFEWFGDSS PGAFAARLLF ERSPTTVAHF 540 KGLDVLIKDG YAKISSDLKF LNTIQSKFLL TTQLSVEGPI RMKEEYVEGL IEIPKISEES 600 MPEQLKGLIG QAAGALQQLP SPIRDAASEG LKLPLGGTFQ RLFMISYLDE EILIIRDAAG 660 APDVLTRLEG PQPNPVDGTA DAVISEYES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462954358 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091585 | 0.0 | FP091585.1 Phyllostachys edulis cDNA clone: bphylf027i18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5VYA0 | 0.0 | A0A1E5VYA0_9POAL; Zinc finger CCCH domain-containing protein 31 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9980 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 8e-48 | C3H family protein |