PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462954127

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 476aa MW: 54601.6 Da PI: 9.0077

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462954127	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.7e-07	51	74	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C++ d+C+FaHg 462954127 51 YKTKLCALWQR-GGCSR-DTCSFAHG 74 9********.*.*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	9.1E-12	45	80	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.591	50	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-5	51	74	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
STRARALLLP SKPYPATRAS DREFSQRELA DPPLDRSAAA MLGPPRRGPA YKTKLCALWQ 60 RGGCSRDTCS FAHGNAELRR FPGSRSSFPP RPGRRDYRGG DFRDRFDRRR SPHRRYSPER 120 DPRGHRSLHD RRPTSQERES SYSRSPSRKS ERRHEKKPDD GETNSSRSLS VSDNNDDRKK 180 DKFSSGDDKE DHEKQLKHIR EDMELLRDDK SHLEIILEEK NAEVRKICSR VNDLELLLKK 240 EKEECHRMTS KMKKFIKAHG RFLKAQEELK RSQARFERLG DLLASDILKR SANEEGSSIN 300 VDEDPNDPYE RSPNAAAPKK RSIPYSTSEE AKAVKKRRER ESDTISRPEN YRSEGTVAEF 360 DKQKKGPETT KSLYLKKKLW EDEKDKLGNA VSSATSDKVK DSPVKHALPS TGMAAHAMDD 420 PIEALELEDR HEPMDASLEN DADDENRSPV MPPRPPPPMV NAYEQYEADD VEVDVD

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

STRARALLLP SKPYPATRAS DREFSQRELA DPPLDRSAAA MLGPPRRGPA YKTKLCALWQ  60
RGGCSRDTCS FAHGNAELRR FPGSRSSFPP RPGRRDYRGG DFRDRFDRRR SPHRRYSPER  120
DPRGHRSLHD RRPTSQERES SYSRSPSRKS ERRHEKKPDD GETNSSRSLS VSDNNDDRKK  180
DKFSSGDDKE DHEKQLKHIR EDMELLRDDK SHLEIILEEK NAEVRKICSR VNDLELLLKK  240
EKEECHRMTS KMKKFIKAHG RFLKAQEELK RSQARFERLG DLLASDILKR SANEEGSSIN  300
VDEDPNDPYE RSPNAAAPKK RSIPYSTSEE AKAVKKRRER ESDTISRPEN YRSEGTVAEF  360
DKQKKGPETT KSLYLKKKLW EDEKDKLGNA VSSATSDKVK DSPVKHALPS TGMAAHAMDD  420
PIEALELEDR HEPMDASLEN DADDENRSPV MPPRPPPPMV NAYEQYEADD VEVDVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	318	337	KKRSIPYSTSEEAKAVKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462954127

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451585.2	0.0	zinc finger CCCH domain-containing protein 13 isoform X1
Swissprot	Q6H7U2	0.0	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A194YMV6	0.0	A0A194YMV6_SORBI; Uncharacterized protein
STRING	Si017193m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	8e-25	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]