PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953993
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 296aa    MW: 30599.5 Da    PI: 7.4087
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953993genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.5e-29102151251
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  462953993 102 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 151
                9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.53E-14100152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-25100152IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-21102151IPR006447Myb domain, plants
PfamPF002493.1E-7103152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLRRELPNLS LQISPPTASS DASTTAAMPL PAEPSAATYD EGSGEVGFFA NPSPGAEPPG  60
LSLELGTPAS GDDAAARRSH LLQAQAGCAF KRSGSKRSAR APRMRWTTAL HARFVHAVEL  120
LGGHERATPK SVLELMNVKD LTLAHVKSHL QNGEEHRQIV TRFDRRGDAA AAAADSDRGG  180
GGGGAVAPVA LPTCDDMVGI CGSSPAAAAT TSAAHFLCAP AAAAPLAAVP SPPPPMHPRR  240
TDHTAVLEKG VAIVDSLHRC QRLPVLQDPQ AAREEVNGHL RTGLHAGDEA AGLRVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-14103151351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14103151351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14103151351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14103151351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953993
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0649763e-64BT064976.1 Zea mays full-length cDNA clone ZM_BFc0084O11 mRNA, complete cds.
GenBankBT0651243e-64BT065124.1 Zea mays full-length cDNA clone ZM_BFb0205B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466395.14e-89probable transcription factor GLK2
TrEMBLC5WZ989e-88C5WZ98_SORBI; Uncharacterized protein
STRINGSb01g007030.11e-88(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-33G2-like family protein