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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462953530 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
C3H |
| Protein Properties |
Length: 364aa MW: 40834.2 Da PI: 8.2458 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462953530 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.8 | 1.4e-06 | 34 | 53 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25
C f+++ G C+yG+ C++ H
462953530 34 VCTFYQK-GACSYGSHCRYEH 53
5******.**********988 PP
|
| 2 | zf-CCCH | 24.2 | 5.8e-08 | 151 | 172 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
++C+ fa+ GtC+yG C+ +Hg
462953530 151 PICS-FAAAGTCPYGKDCSQMHG 172
5788.*****************9 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.0036 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.328 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.45E-6 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.92 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.6E-4 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 11.479 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.093 | 148 | 173 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.7E-5 | 152 | 172 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 8.83E-12 | 204 | 280 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 1.5E-9 | 207 | 275 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Pfam | PF13639 | 4.9E-8 | 215 | 274 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 1.2E-6 | 216 | 273 | IPR001841 | Zinc finger, RING-type |
| PROSITE profile | PS50089 | 12.238 | 216 | 274 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 240 | 249 | IPR017907 | Zinc finger, RING-type, conserved site |
| SMART | SM00356 | 0.25 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.662 | 303 | 332 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MSKRVPCKFF LHGACFKGDH CEFSHDCNDQ PDNVCTFYQK GACSYGSHCR YEHIEASRNH 60
PQPSTTAAAR AASSSSELVS SSGRPHCREC QTVACNQVQK ICKPATALSS RRPAWKVDCH 120
KHNSPNPEDR NTNPSDQTVQ NQTSQCPAHL PICSFAAAGT CPYGKDCSQM HGDLCTFCEK 180
QCLHPYRPNE SGAHIKLCKK NSRRLEALRK SGEIECGVCL DRVLSKPTAA ERRFGLLSDC 240
DHSFCISCIR NWRSTSPTSG MDVNTTLRAC PVCRKLSYYV VPSVTWYFSK EEKQEIIEGY 300
KAKLKSIACK YFDFGKGTCP FGSICFYQHA YRDGRLEEVE LHDDDNSTAI ANIRMSYLLS 360
RLRV
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Sahi VP, et al.
A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
Plant Signal Behav, 2012. 7(3): p. 375-81
[PMID:22499205] - Wadekar HB,Sahi VP,Morita EH,Abe S
MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
Planta, 2013. 237(4): p. 1083-95
[PMID:23262670]
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