 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
462953391 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
C3H |
| Protein Properties |
Length: 382aa MW: 42557.7 Da PI: 7.8734 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462953391 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 27.3 | 6.2e-09 | 92 | 114 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+e+C+++a G Ck+G Ck++H
462953391 92 QEECKYYATPGGCKFGKACKYIH 114
589******************** PP
|
| 2 | zf-CCCH | 37 | 5.9e-12 | 139 | 163 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C++++rtG Cky +CkF+H+
462953391 139 GEKECPYYMRTGSCKYSTNCKFHHP 163
7899********************9 PP
|
| 3 | zf-CCCH | 25.6 | 2.1e-08 | 331 | 356 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C ++ r+G CkyG++C F+H++
462953391 331 DQPVCTYYGRFGVCKYGPSCMFNHPF 356
6899********************95 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.0038 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.84 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-5 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-6 | 93 | 114 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.802 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.1E-6 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.75E-6 | 139 | 164 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-9 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.7E-5 | 143 | 162 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.015 | 283 | 310 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.911 | 283 | 311 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.27E-5 | 287 | 313 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.267 | 329 | 357 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0036 | 329 | 356 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.28E-5 | 330 | 356 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.2E-6 | 331 | 356 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
VPREDYEGLT PDISDSSGFD DKGSASNSVQ GGDDKGSANT SENRRKTSYE IAAEPEKGSY 60
FKKLDEANVT KHKFPRGAKD KRKETVGEGN AQEECKYYAT PGGCKFGKAC KYIHREGKEG 120
KIDAEKVDLN FLGLPLRPGE KECPYYMRTG SCKYSTNCKF HHPDPSNVSS KEPVMEHEND 180
DTPQQNVQGP SQTTVPIWPD QRAMNEQHVP FLAPAQSYSA GMMPPQGMYP SPDWSGYHQV 240
RLNPYYPPGV PFQHFPAPVN HPMYKPADIP GHQQMPTDEY PERPGQPECQ HFVRSGFCKY 300
KMKCRYHHPR SRLPAPLTGG LSPLGLPIKP DQPVCTYYGR FGVCKYGPSC MFNHPFNFGP 360
PPVPAAGPPL HGQYPTPANF TV
|
