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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462953391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 382aa MW: 42557.7 Da PI: 7.8734 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.3 | 6.2e-09 | 92 | 114 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C+++a G Ck+G Ck++H 462953391 92 QEECKYYATPGGCKFGKACKYIH 114 589******************** PP | |||||||
2 | zf-CCCH | 37 | 5.9e-12 | 139 | 163 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ 462953391 139 GEKECPYYMRTGSCKYSTNCKFHHP 163 7899********************9 PP | |||||||
3 | zf-CCCH | 25.6 | 2.1e-08 | 331 | 356 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG++C F+H++ 462953391 331 DQPVCTYYGRFGVCKYGPSCMFNHPF 356 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0038 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-6 | 93 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.802 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-6 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 139 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-5 | 143 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.015 | 283 | 310 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 283 | 311 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 287 | 313 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 329 | 357 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0036 | 329 | 356 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.28E-5 | 330 | 356 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-6 | 331 | 356 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
VPREDYEGLT PDISDSSGFD DKGSASNSVQ GGDDKGSANT SENRRKTSYE IAAEPEKGSY 60 FKKLDEANVT KHKFPRGAKD KRKETVGEGN AQEECKYYAT PGGCKFGKAC KYIHREGKEG 120 KIDAEKVDLN FLGLPLRPGE KECPYYMRTG SCKYSTNCKF HHPDPSNVSS KEPVMEHEND 180 DTPQQNVQGP SQTTVPIWPD QRAMNEQHVP FLAPAQSYSA GMMPPQGMYP SPDWSGYHQV 240 RLNPYYPPGV PFQHFPAPVN HPMYKPADIP GHQQMPTDEY PERPGQPECQ HFVRSGFCKY 300 KMKCRYHHPR SRLPAPLTGG LSPLGLPIKP DQPVCTYYGR FGVCKYGPSC MFNHPFNFGP 360 PPVPAAGPPL HGQYPTPANF TV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462953391 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807655.1 | 0.0 | zinc finger CCCH domain-containing protein 65-like isoform X1 | ||||
Swissprot | Q2QTY2 | 0.0 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A2T7EFS5 | 0.0 | A0A2T7EFS5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00283.1.p | 0.0 | (Panicum virgatum) | ||||
STRING | Sb08g012360.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7928 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 2e-59 | C3H family protein |
Publications ? help Back to Top | |||
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