PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462953313 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bZIP | ||||||||
Protein Properties | Length: 467aa MW: 52223.3 Da PI: 6.6038 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.5 | 4.6e-11 | 41 | 81 | 4 | 41 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR+RKka+i++Le + ++Le+e 462953313 41 AKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 81 6889************************9633355555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.6E-6 | 38 | 103 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.68 | 40 | 82 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-7 | 40 | 86 | No hit | No description |
Pfam | PF00170 | 2.7E-8 | 41 | 81 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.38E-7 | 42 | 83 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 45 | 60 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.5E-27 | 138 | 210 | IPR025422 | Transcription factor TGA like domain |
Pfam | PF14144 | 1.1E-28 | 259 | 333 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MEELAGSRRQ DHNHLQHQPF AGAGADQGTT AAGIKDVKPL AKTLRRLAQN REAARKSRLR 60 KKAYIQQLES SRIRLAQLEQ ELHTARAQGV FYPSNGLLAD QAVAGKGIPI GGIDGLSSEA 120 AMFDVEYGRW QEEHYRLMYE LRAALQQHLP EGELQMYVES CLAHHDEMMG IKDAVIKGDV 180 FHLTSGVWRS PAERCFLWLG GFRPSEVIKG VFYPSNGLLA DQGVAGKGIP IGGIDGLSSE 240 AAMFDVEYGR WQEEHYRLMY ELRAALQQHL PEGELQMYVE SCLAHHDEMM GIKDAVIKGD 300 VFHLTSGVWR SPAERCFLWL GGFRPSEVIK MLLSHVEPLT EQQIVGVYGL QQSALETEEA 360 LSQGLDALYQ SLSDTVVSDA LSCPSNVANY MGQMAAAMNK LSTLEGFVRQ AENLRQQTLH 420 RLNQILTTRQ MARSLLAVSD YFHRLRTLSS LWVTRPRAPQ DQQQGHT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462953313 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966928 | 0.0 | EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800643.1 | 1e-180 | transcription factor TGA2.1-like | ||||
Swissprot | Q52MZ2 | 1e-114 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | A0A2S3H0U7 | 1e-179 | A0A2S3H0U7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7ETY9 | 1e-179 | A0A2T7ETY9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QVU1 | 1e-179 | A0A3L6QVU1_PANMI; Putative bZIP transcription factor superfamily protein isoform X1 | ||||
STRING | Pavir.Ba01723.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7876 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.2 | 1e-104 | bZIP family protein |