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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462952400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 46aa MW: 5183.78 Da PI: 5.4557 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.7e-06 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F + L H++ H 462952400 24 FVCSYCDRKFCNAQALGGHQNAH 46 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.49E-5 | 22 | 46 | No hit | No description |
PROSITE profile | PS50157 | 10.471 | 24 | 46 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 46 aa Download sequence Send to blast |
EEQELNLELT LLHRSISPEP QGVFVCSYCD RKFCNAQALG GHQNAH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462952400 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144380.1 | 9e-20 | uncharacterized protein LOC100277305 | ||||
Refseq | XP_002462423.1 | 2e-19 | uncharacterized protein LOC8056008 | ||||
Refseq | XP_008670210.1 | 9e-20 | zinc finger protein 2 | ||||
TrEMBL | A0A0A9HWN6 | 7e-19 | A0A0A9HWN6_ARUDO; Uncharacterized protein | ||||
STRING | Sb02g025380.1 | 7e-19 | (Sorghum bicolor) | ||||
STRING | GRMZM2G115388_P01 | 4e-19 | (Zea mays) | ||||
STRING | GRMZM2G403590_P01 | 4e-19 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 6e-09 | zinc finger protein 4 |