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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462952358 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
TALE |
| Protein Properties |
Length: 336aa MW: 37193 Da PI: 6.6062 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462952358 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29.7 | 1.1e-09 | 259 | 294 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++e+ LA+ +gL+++q+ +WF N+R ++
462952358 259 YKWPYPSETEKIALAAATGLDQKQINNWFINQRKRH 294
4679*****************************885 PP
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| 2 | ELK | 43 | 9.4e-15 | 214 | 235 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELKhqLlrKY+gyLg+L+qEFs
462952358 214 ELKHQLLRKYGGYLGGLRQEFS 235
9********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MESFVDLGGG CSSRSTSNAS FLQLPLPAAA SASASAQAIA PEAQQDRSRL ALQQLLVAPS 60
SSVPASRHGH QKDDGAVVQG EISPADAETI KAKIMSHPQY SALLAAYLDC QKVGAPPDVS 120
DRLSAVAAKL DAQRWQRILI HFDPLIRFEA YCNMLVKYQE ELARPIQEAA EFFKSVERQL 180
DLITDSAGEG AGSSEDDQDT SCAEDVDPSA EDKELKHQLL RKYGGYLGGL RQEFSKRKKK 240
GKLPKEARQK LLHWWELHYK WPYPSETEKI ALAAATGLDQ KQINNWFINQ RKRHWKPTSE 300
DMPFGTMMEG GGFHVPSAAL YLDRPFMADG MYRLGS
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU966373 | 1e-145 | EU966373.1 Zea mays clone 293957 homeobox protein rough sheath 1 mRNA, complete cds. |
| Publications
? help Back to Top |
- Sato Y, et al.
Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
EMBO J., 1999. 18(4): p. 992-1002
[PMID:10022841] - Ito Y,Eiguchi M,Kurata N
KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
Genesis, 2001. 30(4): p. 231-8
[PMID:11536429] - Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
Plant Cell, 2001. 13(9): p. 2085-98
[PMID:11549765] - Postma-Haarsma AD, et al.
Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
Plant Mol. Biol., 2002. 48(4): p. 423-41
[PMID:11908517] - Kuijt SJ, et al.
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
Plant Mol. Biol., 2004. 55(6): p. 781-96
[PMID:15604716] - Yin H, et al.
SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
Planta, 2013. 237(1): p. 15-27
[PMID:22956125]
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