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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462952177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 312aa MW: 33847.7 Da PI: 7.6227 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.3 | 2e-09 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 ++rWT eE+ l +v ++G g W++I + R+ ++k++w++ 462952177 5 KQRWTSEEEAALRAGVGRHGVGKWRAILKDPHfgstlRCRSNVDLKDKWRN 55 79***************************98888*9989999*******99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.587 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-14 | 3 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-6 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.71E-20 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 23.555 | 103 | 176 | IPR005818 | Linker histone H1/H5, domain H15 |
SMART | SM00526 | 1.5E-8 | 106 | 171 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 8.16E-15 | 106 | 180 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.5E-16 | 106 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.4E-9 | 115 | 169 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGPPKQRWTS EEEAALRAGV GRHGVGKWRA ILKDPHFGST LRCRSNVDLK DKWRNMNVSK 60 KPQSSTKDGD HTMAITTVTS DIDNEIVDVK PIAAVPSEAL NASNPKKSQL RLDMIIMEAI 120 KNLNEPTGSH RTSIANYIEE QYWPSSDFEH SLSALLKDLT ADGKLIKVKR KYKIAPSSPL 180 LEERSPKMLL LEDVQAKPFK IGRDDSKTLT RSLVDAELAR MATMTAEEAA AAAARAVEEA 240 EAIMAEAEAA AKEAEAAEAD AQAAQALAKE ASLALKNRNA TKLVIPGYAK KQSCPSLMLL 300 GAVPPIVDPD AS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462952177 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796386.1 | 1e-121 | single myb histone 6 isoform X1 | ||||
Refseq | XP_025796387.1 | 1e-121 | single myb histone 6 isoform X1 | ||||
Refseq | XP_025796388.1 | 1e-121 | single myb histone 6 isoform X1 | ||||
Refseq | XP_025796389.1 | 1e-121 | single myb histone 6 isoform X1 | ||||
Refseq | XP_025796390.1 | 1e-121 | single myb histone 6 isoform X2 | ||||
Swissprot | C0HIA3 | 1e-118 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | A0A3L6TP23 | 1e-123 | A0A3L6TP23_PANMI; Uncharacterized protein | ||||
STRING | Si036471m | 1e-119 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1324 | 38 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-49 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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