PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462951181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 429aa MW: 47351.5 Da PI: 8.8703 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.1 | 2e-10 | 23 | 47 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C +G +CkF+H+p 462951181 23 EPDCSYYMRTGLCGFGMTCKFNHPP 47 789********************97 PP | |||||||
2 | zf-CCCH | 39 | 1.4e-12 | 68 | 92 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtGtCk+G++CkF+H++ 462951181 68 QPECQYYLRTGTCKFGATCKFHHPR 92 799********************96 PP | |||||||
3 | zf-CCCH | 40.1 | 6.3e-13 | 266 | 291 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ 462951181 266 DQPECQFYMKTGDCKFGAVCKFNHPK 291 689*********************96 PP | |||||||
4 | zf-CCCH | 35.4 | 1.8e-11 | 328 | 352 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++r+G Ck+G++CkF H++ 462951181 328 EPICTFYSRYGMCKFGPNCKFDHPM 352 799********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.202 | 20 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-8 | 23 | 47 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 25 | 48 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.478 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-10 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 69 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 71 | 93 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 110 | 110 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.887 | 116 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 264 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-5 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-5 | 270 | 292 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-5 | 322 | 351 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.648 | 325 | 353 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 325 | 352 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-8 | 328 | 352 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 330 | 350 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MWQMTLGGGE SLEPGPYPER IGEPDCSYYM RTGLCGFGMT CKFNHPPNRK LAVAAARMKG 60 EYPYRAGQPE CQYYLRTGTC KFGATCKFHH PREKAAVTTH VQLNVLGYPL RPFIRQCKFA 120 STCKFHHPQP SNTGAALHGS VYSPGQSATS PGQHTYPGAV SNWAMSRSAS YIASPRWPGH 180 SAYAQVIVPQ SLVQVPGWNP YAAQMGSTSP DHQQRTPGTT QYYQGTYQSE TTGMAQHGMF 240 PSYQGGSVPV GHYATQGENI FPERPDQPEC QFYMKTGDCK FGAVCKFNHP KERLIPAPNC 300 ALNPLGLPLR PHNLSKWFKE FCPKFHGEPI CTFYSRYGMC KFGPNCKFDH PMGTLMYGTA 360 TSPRDDAPTM NYQLEPSPRQ SERFLDGGSG RSHRISQSDS QQIPSENGSM GVVKAGHADR 420 ASGCVKLTV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462951181 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810066.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q2QT65 | 0.0 | C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A3L6REA4 | 0.0 | A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2 | ||||
STRING | BRADI4G08050.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-131 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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