PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462950901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20763.6 Da PI: 10.4187 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 188.7 | 2.9e-58 | 12 | 157 | 22 | 170 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee.lleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPP 119 + vsvP++s++++vtvrCGhCt+llsvnl+ + q l+ ++ l+e+++++ + + ++ ++ + + +s++ + ++ + ++++++++ + rPP 462950901 12 MQVSVPTNSVLTIVTVRCGHCTNLLSVNLRGLMtQSLPEQDPLQENIRPHgINGTSRD---QFGHFEFGS--SSSKFRLPMMYSAQNDHLQEQALAARPP 106 679**************************98764899*********999944444444...444444443..344444555666666666666779**** PP YABBY 120 ekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+i fgl 462950901 107 EKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIQFGL 157 *************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.2E-57 | 12 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.09E-8 | 102 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.8E-5 | 104 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MVGNKKTKVI SMQVSVPTNS VLTIVTVRCG HCTNLLSVNL RGLMTQSLPE QDPLQENIRP 60 HGINGTSRDQ FGHFEFGSSS SKFRLPMMYS AQNDHLQEQA LAARPPEKRQ RVPSAYNRFI 120 KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIQFGLSPG REGGKKLVDE TVAAVTSAPT 180 KIQGFY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462950901 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274018 | 2e-55 | AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds. | |||
GenBank | AK104918 | 2e-55 | AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence. | |||
GenBank | CT829139 | 2e-55 | CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence. | |||
GenBank | CT830040 | 2e-55 | CT830040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA015F11, full insert sequence. | |||
GenBank | FJ940195 | 2e-55 | FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804908.1 | 5e-96 | protein YABBY 6-like isoform X2 | ||||
Swissprot | Q2QM17 | 5e-78 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A0A8Y151 | 1e-103 | A0A0A8Y151_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ca02862.1.p | 4e-92 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-48 | YABBY family protein |