PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462950901
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family YABBY
Protein Properties Length: 186aa    MW: 20763.6 Da    PI: 10.4187
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462950901genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY188.72.9e-581215722170
      YABBY  22 lavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee.lleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPP 119
                + vsvP++s++++vtvrCGhCt+llsvnl+  + q l+ ++ l+e+++++ +  + ++   ++   +  +  +s++ +  ++ + ++++++++  + rPP
  462950901  12 MQVSVPTNSVLTIVTVRCGHCTNLLSVNLRGLMtQSLPEQDPLQENIRPHgINGTSRD---QFGHFEFGS--SSSKFRLPMMYSAQNDHLQEQALAARPP 106
                679**************************98764899*********999944444444...444444443..344444555666666666666779**** PP

      YABBY 120 ekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                ekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+i fgl
  462950901 107 EKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIQFGL 157
                *************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-5712157IPR006780YABBY protein
SuperFamilySSF470952.09E-8102151IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-5104151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVGNKKTKVI SMQVSVPTNS VLTIVTVRCG HCTNLLSVNL RGLMTQSLPE QDPLQENIRP  60
HGINGTSRDQ FGHFEFGSSS SKFRLPMMYS AQNDHLQEQA LAARPPEKRQ RVPSAYNRFI  120
KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIQFGLSPG REGGKKLVDE TVAAVTSAPT  180
KIQGFY
Cis-element ? help Back to Top
SourceLink
PlantRegMap462950901
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740182e-55AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds.
GenBankAK1049182e-55AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence.
GenBankCT8291392e-55CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence.
GenBankCT8300402e-55CT830040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA015F11, full insert sequence.
GenBankFJ9401952e-55FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804908.15e-96protein YABBY 6-like isoform X2
SwissprotQ2QM175e-78YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0A8Y1511e-103A0A0A8Y151_ARUDO; Uncharacterized protein
STRINGPavir.Ca02862.1.p4e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-48YABBY family protein