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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462950675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 286aa MW: 32738.2 Da PI: 9.9855 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.6 | 2.5e-31 | 47 | 97 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifss+g+lyeys+ 462950675 47 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIIFSSRGRLYEYSN 97 79***********************************************95 PP | |||||||
2 | K-box | 92.1 | 9.8e-31 | 115 | 211 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ss ++e + ++++qe+akLk++i nLq+++R l+G+++ ++++++L+qLe +L+k+l kiR++Knell++++e++ ++e elq++n +L++++ee 462950675 115 SSAGTTAEITIQHYKQESAKLKQQITNLQNSNRTLIGDSIATMNHRDLKQLEARLDKGLGKIRARKNELLCSELEYMERREMELQNDNLYLKSRVEE 211 44455788899*********************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-36 | 39 | 98 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.82E-41 | 39 | 113 | No hit | No description |
PRINTS | PR00404 | 1.9E-30 | 41 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 41 | 95 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-31 | 42 | 112 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.417 | 43 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-26 | 48 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-30 | 61 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-30 | 76 | 97 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.805 | 125 | 215 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.9E-23 | 125 | 209 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MKEKRSLQCT LTNSAGLKLK NPMSPGSGSA GAALEKSAGK GKKVEIKRIE NTTNRQVTFC 60 KRRNGLLKKA YELSVLCDAE IALIIFSSRG RLYEYSNNSV RATIERYKKV TSDNSSAGTT 120 AEITIQHYKQ ESAKLKQQIT NLQNSNRTLI GDSIATMNHR DLKQLEARLD KGLGKIRARK 180 NELLCSELEY MERREMELQN DNLYLKSRVE ENERAKQTAD MMGAPSTSEY QQSFLPYDPI 240 RSFLQFSIMQ QQQPSPQPQT SQYYPQQQDD RKLFNLDKWT LGDLRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 1e-18 | 42 | 120 | 3 | 81 | Myocyte-specific enhancer factor 2B |
1n6j_B | 1e-18 | 42 | 120 | 3 | 81 | Myocyte-specific enhancer factor 2B |
1tqe_P | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-18 | 42 | 120 | 4 | 82 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462950675 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ002725 | 1e-169 | KJ002725.1 Phyllostachys edulis MADS-box protein 58 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960599.1 | 1e-147 | MADS-box transcription factor 58 | ||||
Swissprot | Q2V0P1 | 1e-124 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A368QCB7 | 1e-146 | A0A368QCB7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ca00579.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 6e-82 | MIKC_MADS family protein |