PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462949760
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 784aa    MW: 90384.7 Da    PI: 6.5154
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462949760genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.72.5e-15186266290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                f n Y+  +GF+v k +++k+       k tf+C+k gk+++ ++  +++rr+   +rtgC  k+  k+   g+we++++ ++HnH+l 
  462949760 186 FINVYGLVTGFTVIKGSNYKH------QKITFQCNKCGKPTKIETG-QNKRRKDLIERTGCPMKVLAKLI-AGRWEIADVTSQHNHPLK 266
                7799***************99......4678***********9998.999******************99.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-12186266IPR004330FAR1 DNA binding domain
PfamPF105514.0E-22392483IPR018289MULE transposase domain
PROSITE profilePS509669.396669705IPR007527Zinc finger, SWIM-type
SMARTSM005753.8E-4680707IPR006564Zinc finger, PMZ-type
PfamPF044347.4E-4681702IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MAEKYGESVP FQHDQTMTKR NVKYCQDKGS VNGQLPMNQG NESANRGPYG LVVSAMNTKT  60
TRRETDLEER YDIMVADQHG IGGLENRTPE ESLQTPAPYG NVTEMNQLSE IQATQTAVTC  120
TLEHEHENGS LTVIEGYEEP NRCQDTAEAE DEGDEDYFFP SPEELEKARP PEVGMVFATI  180
QDVQRFINVY GLVTGFTVIK GSNYKHQKIT FQCNKCGKPT KIETGQNKRR KDLIERTGCP  240
MKVLAKLIAG RWEIADVTSQ HNHPLKSSPL LSRFFMSHKY MTEDERNFSR ALQESRIKPS  300
KIMELFTNLR DRFKNIPSSN RKMDVNNLEQ SDRPTKTRNR DIESALEHIR KLQKEKPGFY  360
YAVRTEEGNT VKSIFWTDAR ARLDYALYGD YIYLDTAYST VENNMPFVPL IGINGHGETT  420
AFGWALLQDA KAETLSWLFR TFLDVMDGKK PSIIMTHNDS AVQKSVAEVF PSVFHWFSMW  480
HVIRQAAAEF GGFMANKPGM ADELRGLITN TLTTEEFEDS WKAMLEKYGA ASSTHMKLMY  540
QTRLMWAPVY LKHVFCPFIR CETTNSILKD YVLQEDTIET FMDQYSIFHK EAVSIEGDKF  600
EPNLKRPIYC TRQPIERHAA EIYTMGMFLK FQKELLDASA FSVSEKEKHI YIVTKELDYE  660
SAEFLRNSFT VEVDLKTIMF NCLCSKFQRD GILCCHVLRL FTQFGINTIP EHYIKQRWTK  720
KFREQELQKL FEKTGLNVSQ HTLRYAVLMD KGAEICATVS KDANDCKIFV EELERVQHKL  780
ASRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462949760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975158.10.0protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBLA0A2T7CSB80.0A0A2T7CSB8_9POAL; Uncharacterized protein
STRINGPavir.Ga02636.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.23e-72FAR1-related sequence 3