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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
462949722 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 403aa MW: 44148.1 Da PI: 10.4064 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462949722 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 356 | 7.9e-109 | 54 | 403 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.............rernlalsekkaavaerd................maflqrdkalae 69
mdddgs rn+g+ye k nlglqlmss++ +rd+k+ +++ +++++++++rd m+f++++++l
462949722 54 MDDDGSLGiRNWGFYETV---KGNLGLQLMSSVTsDRDTKPllpnggtflqhhgHHNAPHQHHPQHSHHPRDcggasggmpnepssvhMDFVRNEAWLLP 150
9*****999******988...************99****************855333333566778889999*************************987 PP
GAGA_bind 70 .rnkalverdnkllalllvensla...........salpvgvqvlsgtksidslqqlse.........pqledsave.lreeeklealpieeaaeeakek 147
++++ ++r++k+l+ l+v +++p+g++++ +t+ +++lq+l+ q +++a++ + +e++ ++p+ e ++++k++
462949722 151 sQHQHQHPRQQKVLHHLPVGPVGHvghpghgghvvHHHPAGYGMMTDTHGVHTLQMLQPqaqaqaqaqAQPQPQAQDpPPSKEESMQPPLIEDHSVVKNE 250
588999**********99887665678999999999*****************99954447788775533333333334456667788888889999999 PP
GAGA_bind 148 kkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
+ +kkrq++++pk++k kk+kk +++++ ++++ +r + ++k +++v+ng++lD s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+s
462949722 251 PPVKKRQQNRQPKTPKPKKPKK-VVAPREDGEPNRPASRGRGPRKAVGMVINGIDLDLSRIPTPVCSCTGTPQQCYRWGAGGWQSACCTTSISTYPLPMS 349
99999*****************.557878888888779************************************************************** PP
GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
462949722 350 TKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 403
*****************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 403 aa
Download sequence Send
to blast |
KTIGRAYLFL PPSLSSVSLS FSFLSSLSSL SLSLSPSHPQ GSERTLEAAV LFKMDDDGSL 60
GIRNWGFYET VKGNLGLQLM SSVTSDRDTK PLLPNGGTFL QHHGHHNAPH QHHPQHSHHP 120
RDCGGASGGM PNEPSSVHMD FVRNEAWLLP SQHQHQHPRQ QKVLHHLPVG PVGHVGHPGH 180
GGHVVHHHPA GYGMMTDTHG VHTLQMLQPQ AQAQAQAQAQ PQPQAQDPPP SKEESMQPPL 240
IEDHSVVKNE PPVKKRQQNR QPKTPKPKKP KKVVAPREDG EPNRPASRGR GPRKAVGMVI 300
NGIDLDLSRI PTPVCSCTGT PQQCYRWGAG GWQSACCTTS ISTYPLPMST KRRGARIAGR 360
KMSQGAFKKV LEKLAGEGYN LNNPIDLKTF WAKHGTNKFV TIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
