PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462949311
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 360aa    MW: 40219.5 Da    PI: 4.6799
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462949311genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.5e-12621251786
                E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 lp kf+++h  +++    + ++lede+g   + ++   + +++  l++GW++F+  +g+k+gD vvF+l+g
  462949311  62 GLPAKFCNKHlpMYD----TVIVLEDENGDNHDTNY--LGAKQG--LSGGWRGFAMKHGIKVGDAVVFELVG 125
                59*****99965444....57***************..888877..9**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.0E-654146IPR003340B3 DNA binding domain
PfamPF023629.5E-1062125IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-1562129IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-1262129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-1463144No hitNo description
PROSITE profilePS508639.91163146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MELVKQRFAL LDNSSSSSSS ESDNDEDFVP MDDELAIFVD HQPIAIHYDD TDDEKKVIPK  60
KGLPAKFCNK HLPMYDTVIV LEDENGDNHD TNYLGAKQGL SGGWRGFAMK HGIKVGDAVV  120
FELVGSTIMP GSKKELKFKA YIVRANEFTT TDGAVSLLNL DLCKEGKLSS SAEEESAGEL  180
KSGEDLKVNT NRVHGDVPLI DTNGLVSEAI DGIRMLDSDI EFDDVTSFNN FNIVVDRSVI  240
DREFHIDLRR TYYDLCCSQK EFLHEYLLKQ LSLTLVVGVI METIKIANAL GHARLKSLEC  300
QQYEKLRLES ARAAEKAKAL EHQLSGVKDI LHKMDEDMKQ MESAVKKSDA ELQQLATAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMap462949311
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660753.11e-117B3 domain-containing protein Os01g0234100
SwissprotQ0JP994e-97Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A368QZQ91e-116A0A368QZQ9_SETIT; Uncharacterized protein
STRINGPavir.Eb00031.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-20B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]