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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
462949007 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family |
M-type_MADS |
Protein Properties |
Length: 142aa MW: 16353.6 Da PI: 8.703 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
462949007 | genome | Tef | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 77.2 | 1.2e-24 | 3 | 52 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+ rqv fskRr g++KKA+ELS LCda+va+++fs+ g+ly ++s
462949007 3 RIEDRVSRQVRFSKRRSGLFKKAYELSELCDAQVALVVFSPAGRLYQFAS 52
8***********************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 142 aa
Download sequence Send
to blast |
MRRIEDRVSR QVRFSKRRSG LFKKAYELSE LCDAQVALVV FSPAGRLYQF ASSNSSVDKI 60 FDRYWDLANT LNDLNIEARD SWIGFNIQKE QSAAGSLYDQ LNNIGQWTLQ PNVKDLSMAE 120 LRCMEEILTD ALTIIKRISR AL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 8e-16 | 3 | 68 | 10 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK242980 | 4e-62 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |