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Plant Transcription
Factor Database
|
Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462948658 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
bHLH |
| Protein Properties |
Length: 309aa MW: 32378.5 Da PI: 9.7698 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462948658 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 29.1 | 1.7e-09 | 180 | 221 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ RR+ri +++ +L+el+P+ +K++ +++LekA+ Y+k Lq
462948658 180 AKTRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 221
589*****************97.....8******************9 PP
|
| 2 | HLH | 28.4 | 2.9e-09 | 225 | 265 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ RR+ri +++ +L+el+P+ +K++ +++LekA+ Y+k Lq
462948658 225 KTRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 265
78*****************97.....8******************9 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50888 | 15.091 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.5E-11 | 173 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 6.32E-12 | 173 | 225 | No hit | No description |
| SuperFamily | SSF47459 | 4.71E-12 | 175 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 7.9E-12 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.3E-6 | 181 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 12.76 | 215 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 7.59E-12 | 225 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 6.32E-11 | 225 | 269 | No hit | No description |
| Pfam | PF00010 | 2.2E-6 | 225 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.4E-10 | 226 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 9.1E-5 | 227 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MALVREHTAY GGGFDGADSS PFDALLGADA AALFGGYSSL DPASFTGGNV WGAGAGAAAS 60
VLAFDRAAAA GSGGEDDSDQ APVTSVGFDA TTGCFTLTER AASSGGAGRA FGLLFPSTSS 120
GSGGSPDRAA PVRASQKRSY PGVERQQDVS PKKPCGAGRK TSKPKPAPAV PTKDPQSLAA 180
KTRRERISER LRTLQELVPN GTKVDLVTML EKAISYVKFL QLQVKTRRER ISERLRTLQE 240
LVPNGTKVDL VTMLEKAISY VKFLQLQVKV LATDEFWPAQ GGKAPEISQV KEALDAILSS 300
SSSQRGQLN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK109662 | 4e-98 | AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Coego A, et al.
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
Plant J., 2014. 77(6): p. 944-53
[PMID:24456507] - Lin CY, et al.
Pathways involved in vanadate-induced root hair formation in Arabidopsis.
Physiol Plant, 2015. 153(1): p. 137-48
[PMID:24833217] - Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
Root hairs.
Arabidopsis Book, 2014. 12: p. e0172
[PMID:24982600] - Kim CM,Dolan L
ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
PLoS Genet., 2016. 12(8): p. e1006211
[PMID:27494519] - Moro CF, et al.
S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
New Phytol., 2017. 213(4): p. 1771-1786
[PMID:27880005] - Bahmani R,Kim DG,Kim JA,Hwang S
The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
Front Plant Sci, 2016. 7: p. 1763
[PMID:27933081] - Liao X,Lovett B,Fang W,St Leger RJ
Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
[PMID:28708056] - Feng Y, et al.
Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
[PMID:29233944]
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