PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 241aa MW: 26696 Da PI: 7.7584

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462947392	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.9e-17	61	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+e++++a k++G W+ I +++g ++t+ q++s+ qk+ 462947392 61 REKWTEDEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 105 789***************55.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.8E-16	55	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.465	56	110	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-10	58	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-16	59	108	IPR006447	Myb domain, plants
SMART	SM00717	4.9E-14	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	61	104	IPR001005	SANT/Myb domain
CDD	cd00167	6.24E-12	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0009845	Biological Process	seed germination
GO:0009909	Biological Process	regulation of flower development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MAAMAQVEER DGLDSSDLAI DKRLTLEVAK PPLMDDMMQP KAGMDGYPVK VRKPYTITKQ 60 REKWTEDEHE KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGASNTIE 120 IPPPRPKRKP LHPYPRKCTN SSTVANPATG QPKLAPISSS SGSDQENGSP VSVLSAMQSD 180 AFGSSVSNPS TGCTSPVSSS DDGTNVPGEE NMPHQQTEIH QSVKVIFHHL DHPFYWASLT 240 Y

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:23371945}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462947392

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:19805390}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966527.1	1e-120	uncharacterized protein LOC101785788
Swissprot	F4K5X6	1e-47	RVE2_ARATH; Protein REVEILLE 2
TrEMBL	A0A0A9D841	1e-126	A0A0A9D841_ARUDO; Uncharacterized protein
STRING	Si006457m	1e-119	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7783	36	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	5e-41	MYB_related family protein

Publications ? help Back to Top
Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V A weed reaches new heights down under Plant Cell, 1999. 11(10): p. 1817-26 [PMID:10521514] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]