PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946751
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 573aa    MW: 63342.2 Da    PI: 5.6059
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946751genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-14111190186
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                f+k++++s+v +  +l lp kf+++h  +++    + ++lede+g   + ++   + +++  l++GW++F+  + +k+gD vvF+l+g
  462946751 111 FVKEMLKSHVVQGFWLGLPAKFCNKHlpMYD----TVIVLEDENGDNHDTNY--LGAKQG--LSGGWRGFAMKHVIKVGDAVVFELMG 190
                89************************75444....57***************..888877..9**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-16104193IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-19105193IPR015300DNA-binding pseudobarrel domain
CDDcd100177.74E-21109192No hitNo description
PfamPF023621.4E-12111190IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856111211IPR003340B3 DNA binding domain
SMARTSM010191.1E-14111211IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-5272302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-6273302IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.177274321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MERKMDLVKE RLAMLDSTDS SSSSSENDND EDFVPMDDEL AIVVDHQPIE IHYDDTNDEK  60
KVIPKKHMIF SGHLYMHSHF LTNSSFRGDC GSAMARAKEL QAKLPQQHPS FVKEMLKSHV  120
VQGFWLGLPA KFCNKHLPMY DTVIVLEDEN GDNHDTNYLG AKQGLSGGWR GFAMKHVIKV  180
GDAVVFELMG STILPGSKEP PKFKTYIVRA NEFTTTDGAV SLLNLDVCKE GNLSSSPEEE  240
SAGEFKSEDL KVNTNRVHGE VPLIDANGLV KQGLSGGWRG FAMKHAIKVG DAVVFELVGS  300
TILPGSEKEP PKFKTYIARA NEFTTTDGAV SLLNLDVCKE GSLSSSPEEE SVGELKSEED  360
LKANTNRVHG EVPLIDANGV DSEAIDGIRM LDSDIEFDDV TSFSNFNIVV DRLVIDCKFH  420
KHLRRKYYDL CCSQKAFLHK HLLKQLNLTL VVGVIMETIN IAEGIRACKT AGSSREDLLI  480
WKKTLESFEL LGMDVAFLLN RVSALLGLSQ TPSRGLSKLR LESAHAAEKA KALELQLSGV  540
KDVLRRMAAE MKDMESSVKK SDAALQQLAT APW
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946751
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660753.11e-119B3 domain-containing protein Os01g0234100
SwissprotQ0JP991e-104Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0A9PFY51e-124A0A0A9PFY5_ARUDO; Uncharacterized protein
STRINGPavir.Eb00031.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-33B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]