PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462946715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 30255.9 Da PI: 6.2491 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.4e-20 | 51 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p +kr+r++lg+f taeeAa a+++a+++l+g 462946715 51 EYRGVRQRT-WGKWVAEIREP---NKRTRIWLGSFATAEEAALAYDEAARRLYG 100 69****999.**********9...337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.69E-28 | 50 | 110 | No hit | No description |
SMART | SM00380 | 2.7E-36 | 51 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-14 | 51 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 51 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.484 | 51 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 51 | 109 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-10 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MLLVRACAGG SRGVEEGELD LKSMESFAGR KRVWKKGPTR GKGGPQNAAC EYRGVRQRTW 60 GKWVAEIREP NKRTRIWLGS FATAEEAALA YDEAARRLYG PDAFLNLPHL RASAAAATHQ 120 RLSSPSSNKT TRAPPAQQQL SPPLHLPPAS SSPCSTVTTT TGGAPADSAA ALLPPPPMSC 180 FHALEQAVAM TAAGRDGAGK PQLDLREFLQ QIGVLKAGAD EEGGAITKEY GEGDAAGAFG 240 NGEFDWDALA ADLHGGAGGV NGSAFQMDDL HEVDQFGCCS FPIPVWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-17 | 51 | 108 | 5 | 63 | ATERF1 |
3gcc_A | 5e-17 | 51 | 108 | 5 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462946715 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727874 | 1e-109 | KJ727874.1 Zea mays clone pUT5967 AP2-EREBP transcription factor (EREB38) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309128.1 | 1e-113 | dehydration-responsive element-binding protein 2E-like | ||||
TrEMBL | A0A1B6QQ74 | 1e-111 | A0A1B6QQ74_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G419901_P01 | 1e-103 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9575 | 29 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 2e-33 | ERF family protein |