PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946715
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 287aa    MW: 30255.9 Da    PI: 6.2491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946715genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-2051100255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr++  +g+WvAeIr+p   +kr+r++lg+f taeeAa a+++a+++l+g
  462946715  51 EYRGVRQRT-WGKWVAEIREP---NKRTRIWLGSFATAEEAALAYDEAARRLYG 100
                69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.69E-2850110No hitNo description
SMARTSM003802.7E-3651114IPR001471AP2/ERF domain
PfamPF008473.7E-1451100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3051109IPR001471AP2/ERF domain
PROSITE profilePS5103222.48451108IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2151109IPR016177DNA-binding domain
PRINTSPR003671.6E-105263IPR001471AP2/ERF domain
PRINTSPR003671.6E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MLLVRACAGG SRGVEEGELD LKSMESFAGR KRVWKKGPTR GKGGPQNAAC EYRGVRQRTW  60
GKWVAEIREP NKRTRIWLGS FATAEEAALA YDEAARRLYG PDAFLNLPHL RASAAAATHQ  120
RLSSPSSNKT TRAPPAQQQL SPPLHLPPAS SSPCSTVTTT TGGAPADSAA ALLPPPPMSC  180
FHALEQAVAM TAAGRDGAGK PQLDLREFLQ QIGVLKAGAD EEGGAITKEY GEGDAAGAFG  240
NGEFDWDALA ADLHGGAGGV NGSAFQMDDL HEVDQFGCCS FPIPVWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1751108563ATERF1
3gcc_A5e-1751108563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946715
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278741e-109KJ727874.1 Zea mays clone pUT5967 AP2-EREBP transcription factor (EREB38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309128.11e-113dehydration-responsive element-binding protein 2E-like
TrEMBLA0A1B6QQ741e-111A0A1B6QQ74_SORBI; Uncharacterized protein
STRINGGRMZM2G419901_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-33ERF family protein