PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946424
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 322aa    MW: 36301.3 Da    PI: 7.7089
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946424genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.89.4e-49271582128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                 pGfrFhPtd+el+ +yLk++ve++ +++ e+ike+diyk++PwdLp+        a+ek+wyfF+ r +ky+++ r+nr+t sg+Wkatg dk++++  
  462946424  27 FPGFRFHPTDQELIGFYLKRRVENRGFSI-EIIKEIDIYKHDPWDLPSearhvVQGAGEKDWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIHDGa 125
                69***************************.89**************95366543334888*************************************987 PP

        NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                +ge +glkk+Lv+y+g+a +g+ktdW+mhe+rl
  462946424 126 GGECIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 158
                8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-5426182IPR003441NAC domain
PROSITE profilePS5100554.02126182IPR003441NAC domain
PfamPF023651.6E-2428158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEDKKPLVRT KESSGTGGGN EEDDLVFPGF RFHPTDQELI GFYLKRRVEN RGFSIEIIKE  60
IDIYKHDPWD LPSEARHVVQ GAGEKDWYFF CLRGRKYRNS IRPNRVTGSG FWKATGIDKP  120
IHDGAGGECI GLKKSLVYYR GSAGRGTKTD WMMHEFRLPS TSSAAADVQD AEIWTICRIF  180
KRNMSCNRRY QQQKQEHRGN NKRSPQQQQL DYYYGYGYQH HQHHHYTGGG ASMASSFEST  240
TTDTSEAHAT DHDQPFLLHG FLGASPVDVT AAATKTSATI GSSQLLSSSG WSELTSFSRD  300
GGSSWDELGR ILEISTHVPY CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-502818822174NAC domain-containing protein 19
3swm_B3e-502818822174NAC domain-containing protein 19
3swm_C3e-502818822174NAC domain-containing protein 19
3swm_D3e-502818822174NAC domain-containing protein 19
3swp_A3e-502818822174NAC domain-containing protein 19
3swp_B3e-502818822174NAC domain-containing protein 19
3swp_C3e-502818822174NAC domain-containing protein 19
3swp_D3e-502818822174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946424
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038293e-49AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043143e-49AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149633e-49AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126153e-49CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809001.11e-136transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-82NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1E5WKN51e-151A0A1E5WKN5_9POAL; Transcription factor JUNGBRUNNEN 1
STRINGPavir.Ca02638.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-84NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]