PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462945678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 141aa MW: 15755.1 Da PI: 10.5079 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.4 | 4.4e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++nrqvtfskRr g++KKA+EL +LCdaev +++fsstg+lye++s 462945678 10 RIENSTNRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGRLYEFAS 59 9***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.57E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 5.62E-33 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MGRGKIVIQR IENSTNRQVT FSKRRSGLFK KAKELAILCD AEVGLVVFSS TGRLYEFAST 60 SMKSVIERYN EAKEDHHTAI SASAEAKRLG PLDLRLSGHK HVVVTQAQES ISLIPTAYPK 120 YQKQGNRNSN KMTLMSFSCF S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-25 | 1 | 78 | 1 | 78 | MEF2C |
5f28_B | 9e-25 | 1 | 78 | 1 | 78 | MEF2C |
5f28_C | 9e-25 | 1 | 78 | 1 | 78 | MEF2C |
5f28_D | 9e-25 | 1 | 78 | 1 | 78 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462945678 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821378.1 | 2e-48 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6VAM4 | 3e-45 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
TrEMBL | A0A2S3I2P0 | 5e-47 | A0A2S3I2P0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D7M0 | 5e-47 | A0A2T7D7M0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IH16 | 1e-47 | A0A2T8IH16_9POAL; Uncharacterized protein | ||||
STRING | XP_008800745.1 | 2e-44 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 5e-42 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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