PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

462945468

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 969aa MW: 103824 Da PI: 9.2574

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462945468	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.8	2.2e-09	48	71	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C +G+rC+++H++ 462945468 48 PDCGYYLRTGACGFGERCRYNHPR 71 78********************96 PP
2	zf-CCCH	36.7	7e-12	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ 462945468 96 QPVCEYYLKTGTCKFGSNCKYHHPK 120 789********************96 PP
3	zf-CCCH	37.7	3.5e-12	140	165	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ 462945468 140 GEKECSYYMKTGHCKFGSTCKFHHPE 165 7899********************96 PP
4	zf-CCCH	35.1	2.2e-11	293	319	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG+Ck+G++Ck++H++ 462945468 293 PGQPECQFYLKTGHCKFGATCKYHHPQ 319 5789*********************97 PP
5	zf-CCCH	32.3	1.7e-10	341	365	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++a++G+C+yG Ck+ H++ 462945468 341 APPCAYYAQNGYCRYGVACKYDHPM 365 689********************95 PP
6	zf-CCCH	23.7	8.6e-08	573	589	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 rtGtC yG+rC+++H++ 462945468 573 RTGTCAYGERCRYNHPR 589 8**************96 PP
7	zf-CCCH	32.6	1.4e-10	613	639	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC ++ ++G Ck+G++Ck+ H++ 462945468 613 PGQPLCEYYVKNGSCKFGSNCKYDHPR 639 589**********************96 PP
8	zf-CCCH	32.8	1.2e-10	658	683	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ 462945468 658 GEKECSYYIKTGHCKFGNTCKFHHPE 683 7899********************96 PP
9	zf-CCCH	36.5	8.4e-12	808	834	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tGtCk+G++Ck++H++ 462945468 808 PGQPECEHYMKTGTCKFGPTCKYHHPQ 834 5789*********************97 PP
10	zf-CCCH	30.6	5.8e-10	856	880	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +C ++a+ G+Ck+G++CkF H++ 462945468 856 SQPCAYYAQHGFCKFGPTCKFDHPM 880 679********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.887	44	72	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0014	44	71	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.2E-7	48	71	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.55E-5	50	72	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.6E-7	93	120	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.173	93	121	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-9	96	120	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-6	96	122	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-5	98	122	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-6	138	165	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.915	138	166	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-9	140	165	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.13E-5	141	165	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.1E-4	144	164	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.1E-6	292	319	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.211	292	320	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.5E-9	294	319	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-5	296	320	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-4	298	320	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-6	338	365	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.145	338	366	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-8	341	365	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-5	341	367	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-4	343	363	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.9	567	589	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.953	573	590	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-5	573	589	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-6	612	639	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.53	612	640	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.2E-8	614	639	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	615	640	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.4E-5	617	639	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-4	656	683	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.605	656	684	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-7	658	683	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.63E-6	659	683	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-4	662	682	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.056	807	835	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5E-6	807	834	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-9	809	834	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.41E-5	811	834	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.9E-6	853	880	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.859	853	881	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-7	855	880	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.37E-6	855	883	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-4	857	878	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence Send to blast
AARAPAPASK GRRISVDSGL TCGRANAWLQ GRCGGWGWTG AAAAGGGPDC GYYLRTGACG 60 FGERCRYNHP RDRGGTEFGG GVKNGAASDF PERLGQPVCE YYLKTGTCKF GSNCKYHHPK 120 QDGSVQSVVL NNNGFPLRPG EKECSYYMKT GHCKFGSTCK FHHPEFGGPP VTPGIYPPLQ 180 PASVPSPHAY ASLANWQMGR SPVVPGSYIQ GSYTPMMLSS GMVPLQGWSP YPASVNPVAS 240 GGTQQTVQAG PLYGMGNHGS STAIAYGSPY MPYSQSAGQS SNNQQEHVFP ERPGQPECQF 300 YLKTGHCKFG ATCKYHHPQD LSAPKSNYMF SPLCLPLRPG APPCAYYAQN GYCRYGVACK 360 YDHPMGTLGY NSSALPLSDM PIAPYPLGFP VAVLAPSSSS PDLRPDYIST KDPSVNQVAS 420 PVAAPEPVGV ILPKGGFPPD TIMRAQTSTT NGGSSSPGAS PRPRAEEKRK GEESPGSNRG 480 AGLLLLLCGA EKAGIFFFVR LCSGAPLPEL RSATRRRPIA RELLSAGGRE RARPRHRPRR 540 YVVRLDLAWG AASFAQLGVD AEAGARRRGG GVRTGTCAYG ERCRYNHPRD RRAAAAVNGV 600 GRTTSTVEYP ERPGQPLCEY YVKNGSCKFG SNCKYDHPRE GGFVPAVLNR SGYPLRPGEK 660 ECSYYIKTGH CKFGNTCKFH HPELGVPETS TIYPPVQPSA ISSAHPYTQL ATSQMGRPPF 720 VPGPFVPGSY PPMMLPSAVM PMQGWNPYIS HMNQVTPSGG QQTVQAPYGL SHQGPTSSVT 780 YGGHYPQLYH SAGPSSSNKQ GYGFPERPGQ PECEHYMKTG TCKFGPTCKY HHPQYFSALN 840 PNYMLNLLGL PLRPGSQPCA YYAQHGFCKF GPTCKFDHPM GSLSYSPSAS SLTDMPVAPY 900 PLSFPVAHMA PSAPSSDLRP QYAVTKEPSV NQQALPGTTY GHPGSITKVY APHTLIRSPA 960 STAAGMQAS

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence Send to blast

AARAPAPASK GRRISVDSGL TCGRANAWLQ GRCGGWGWTG AAAAGGGPDC GYYLRTGACG  60
FGERCRYNHP RDRGGTEFGG GVKNGAASDF PERLGQPVCE YYLKTGTCKF GSNCKYHHPK  120
QDGSVQSVVL NNNGFPLRPG EKECSYYMKT GHCKFGSTCK FHHPEFGGPP VTPGIYPPLQ  180
PASVPSPHAY ASLANWQMGR SPVVPGSYIQ GSYTPMMLSS GMVPLQGWSP YPASVNPVAS  240
GGTQQTVQAG PLYGMGNHGS STAIAYGSPY MPYSQSAGQS SNNQQEHVFP ERPGQPECQF  300
YLKTGHCKFG ATCKYHHPQD LSAPKSNYMF SPLCLPLRPG APPCAYYAQN GYCRYGVACK  360
YDHPMGTLGY NSSALPLSDM PIAPYPLGFP VAVLAPSSSS PDLRPDYIST KDPSVNQVAS  420
PVAAPEPVGV ILPKGGFPPD TIMRAQTSTT NGGSSSPGAS PRPRAEEKRK GEESPGSNRG  480
AGLLLLLCGA EKAGIFFFVR LCSGAPLPEL RSATRRRPIA RELLSAGGRE RARPRHRPRR  540
YVVRLDLAWG AASFAQLGVD AEAGARRRGG GVRTGTCAYG ERCRYNHPRD RRAAAAVNGV  600
GRTTSTVEYP ERPGQPLCEY YVKNGSCKFG SNCKYDHPRE GGFVPAVLNR SGYPLRPGEK  660
ECSYYIKTGH CKFGNTCKFH HPELGVPETS TIYPPVQPSA ISSAHPYTQL ATSQMGRPPF  720
VPGPFVPGSY PPMMLPSAVM PMQGWNPYIS HMNQVTPSGG QQTVQAPYGL SHQGPTSSVT  780
YGGHYPQLYH SAGPSSSNKQ GYGFPERPGQ PECEHYMKTG TCKFGPTCKY HHPQYFSALN  840
PNYMLNLLGL PLRPGSQPCA YYAQHGFCKF GPTCKFDHPM GSLSYSPSAS SLTDMPVAPY  900
PLSFPVAHMA PSAPSSDLRP QYAVTKEPSV NQQALPGTTY GHPGSITKVY APHTLIRSPA  960
STAAGMQAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	528	538	RERARPRHRPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462945468

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566542.2	0.0	uncharacterized protein LOC100827764
Swissprot	Q5NAW2	0.0	C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A0D9UZ82	0.0	A0A0D9UZ82_9ORYZ; Uncharacterized protein
STRING	LPERR01G09410.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2761	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-112	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Friedrichs G,Fikri M,Guo Y,Temps F Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8. J Phys Chem A, 2008. 112(25): p. 5636-46 [PMID:18512897] Ning H,Gong C,Li Z,Li X Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis. J Phys Chem A, 2015. 119(18): p. 4093-107 [PMID:25868004]