PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 103aa MW: 12280.2 Da PI: 10.1577

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462945137	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.2e-20	4	55	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le++F+ + ++ +++ +LA+ lgL+ rqV +WFqN+Ra++k 462945137 4 KRFSEEQIKSLESMFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWK 55 57*************************************************9 PP
2	HD-ZIP_I/II	125.3	2.7e-40	2	93	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+k+LE++F +++kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + ++L+ke+++L ++l++ 462945137 2 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYDTLKKEKHALLKQLEK 93 69*************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.8E-14	1	61	IPR001356	Homeobox domain
PROSITE profile	PS50071	17.2	1	57	IPR001356	Homeobox domain
CDD	cd00086	1.19E-12	3	58	No hit	No description
SuperFamily	SSF46689	8.13E-19	3	69	IPR009057	Homeodomain-like
Pfam	PF00046	1.9E-17	3	55	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.3E-20	4	64	IPR009057	Homeodomain-like
PRINTS	PR00031	4.5E-6	28	37	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	32	55	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.5E-6	37	53	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.8E-13	57	99	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MNKKRFSEEQ IKSLESMFAT QTKLEPRQKL QLARDLGLQP RQVAIWFQNK RARWKSKQLE 60 REYSALRDDY DALLCSYDTL KKEKHALLKQ LEKLAEMLQE PGP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462945137

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087258	1e-115	BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957433.1	2e-62	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	9e-61	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	9e-61	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A0A9CR23	2e-61	A0A0A9CR23_ARUDO; Uncharacterized protein
STRING	Si030983m	6e-62	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-43	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]