PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462944531

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 480aa MW: 51444.6 Da PI: 6.2579

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462944531	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.1e-39	101	161	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss 462944531 101 PDKILPCPRCNSMDTKFCYYNNYNVKQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSSS 161 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	98	153	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	103	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.546	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MELAGAASAQ PPESHVEPPR PPPQPPEKDS SKGTRDMMTT EEEPSIDQET EFGQTNSSSL 60 NSSSECENLT PNDEMTGSES NSEAAKTDGD ELSREKVLKK PDKILPCPRC NSMDTKFCYY 120 NNYNVKQPRH FCKSCQRYWT AGGSMRNIPV GAGRRKSKSS SSNCRSILIP GSSLAPPVGE 180 ASLYPLSING NQAAVKFGPD SPLCNSMASV LKIGEQSKNA NPVLTVQPRN GETQTCAPSM 240 TASDSPQSEP LKVAASGHQN GIVGQCNGIT SMHPIPCFPG PPFVYPWSPA WNGIPAMAAP 300 VCPAPAEAAN SSEHSNISNA QWNVPPMVPV MPPGFCGPPI PFPVMPPSVW PFITPWPNGA 360 WSPPWLGPSS SLPASSPTSS TTCSDGGSPV LGKHSRDSKP QGDEKSERCL WIPKTLRIDD 420 PDEAAKSSIW TTLGIEPGER GMFRPFQSKP KSREQISDAT RVLQANPAAM SRSQSFQENT

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MELAGAASAQ PPESHVEPPR PPPQPPEKDS SKGTRDMMTT EEEPSIDQET EFGQTNSSSL  60
NSSSECENLT PNDEMTGSES NSEAAKTDGD ELSREKVLKK PDKILPCPRC NSMDTKFCYY  120
NNYNVKQPRH FCKSCQRYWT AGGSMRNIPV GAGRRKSKSS SSNCRSILIP GSSLAPPVGE  180
ASLYPLSING NQAAVKFGPD SPLCNSMASV LKIGEQSKNA NPVLTVQPRN GETQTCAPSM  240
TASDSPQSEP LKVAASGHQN GIVGQCNGIT SMHPIPCFPG PPFVYPWSPA WNGIPAMAAP  300
VCPAPAEAAN SSEHSNISNA QWNVPPMVPV MPPGFCGPPI PFPVMPPSVW PFITPWPNGA  360
WSPPWLGPSS SLPASSPTSS TTCSDGGSPV LGKHSRDSKP QGDEKSERCL WIPKTLRIDD  420
PDEAAKSSIW TTLGIEPGER GMFRPFQSKP KSREQISDAT RVLQANPAAM SRSQSFQENT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462944531

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658977.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X1
TrEMBL	A0A1D8RJ10	0.0	A0A1D8RJ10_ELECO; DNA-binding with one finger protein 8
STRING	OB07G32200.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-45	cycling DOF factor 2