 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
462943921 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
LBD |
| Protein Properties |
Length: 151aa MW: 16185.3 Da PI: 11.2887 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462943921 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 69.3 | 8.4e-22 | 96 | 147 | 1 | 52 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpee 52
aCaaCk++rrkC++dC+lapyfpa+q+++f +h+lFG+sn+lk+l++l+++
462943921 96 ACAACKYQRRKCNADCPLAPYFPADQQRRFLHAHRLFGVSNILKTLRRLRPD 147
7**********************************************99875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 151 aa
Download sequence Send
to blast |
MVPDSVPDNC PAGLRIHLVV TSASVGNARG FSSSSTGAWN LANAGTTTFH NNDLLLRRHG 60
RLPRPAPPPH SAHPSPRGGN GSNGVGSPSS SQQNQACAAC KYQRRKCNAD CPLAPYFPAD 120
QQRRFLHAHR LFGVSNILKT LRRLRPDLCA A
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005388 | 4e-53 | AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04. |
| GenBank | AP014964 | 4e-53 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 4e-53 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
