PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462943402

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 668aa MW: 74578.6 Da PI: 7.3639

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462943402	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	83	95	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 CkyG++C+F+H+ 462943402 83 SCKYGASCRFSHD 95 7***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.366	66	97	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.193	110	135	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	3.4E-74	312	555	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	1.67E-65	316	629	No hit	No description
CDD	cd02801	5.82E-95	316	548	No hit	No description
Pfam	PF01207	9.5E-54	319	553	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	400	418	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MTRAVTAASQ PTPEELVARA VAPVKPAFLR PPPVREAPKE DGKAAGVTAE KKSKRQLKRE 60 RQQEKRSTSH LCIEVGKSGN VDSCKYGASC RFSHDINAYL AQKPADLEGT CPFASSGMLC 120 PYGLTCRYLS THNNQSPENC PEGNREINSF NKDTQKLLWK NKYDFPKASA QIKLLGLKDI 180 KKNKVNSAND DQKADIDSPD KSCELNGNDK SESPCNTSGN VEPESNLCKE TDNSEGELLV 240 AKSVQLVEPR PLKKSKVEVD ETQNHGAGIH DNEAEPEDQK LSNGLEVPSN NQSSCRIDLI 300 TAPHLREKKI IDFREKLYLA PLTTVGNLPF RRLCKTLGAD ITCGEMAMCS NLLQGQASEW 360 ALLRRHSSED LFGVQICGPY PDTIARTVEL IDNECLVDFI DINMGCPIDI VVNKGAGSSL 420 LTKPMRIKSI VQAASTVTEK PLTVKVRTAF FEGRNRADSI VSDIYDWGAS ALTIHGRSRQ 480 QRYSKLADWD YIYQCAQKAP DYLHVIGNGD VFSFTDWNKH LSDCSKISTC MIARGALIKP 540 WIFTEIKEQK HWDISSGERL NILKDFVRFG LEHWGSDSKG VETTRYFLLE WLSYTCRYIP 600 VGLLDVIPQR LNWRPPSYCG RDDLETMMAS DSAADWIRIS EMLLGKVPEG FKFAPKHKSN 660 AYDRAENG

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MTRAVTAASQ PTPEELVARA VAPVKPAFLR PPPVREAPKE DGKAAGVTAE KKSKRQLKRE  60
RQQEKRSTSH LCIEVGKSGN VDSCKYGASC RFSHDINAYL AQKPADLEGT CPFASSGMLC  120
PYGLTCRYLS THNNQSPENC PEGNREINSF NKDTQKLLWK NKYDFPKASA QIKLLGLKDI  180
KKNKVNSAND DQKADIDSPD KSCELNGNDK SESPCNTSGN VEPESNLCKE TDNSEGELLV  240
AKSVQLVEPR PLKKSKVEVD ETQNHGAGIH DNEAEPEDQK LSNGLEVPSN NQSSCRIDLI  300
TAPHLREKKI IDFREKLYLA PLTTVGNLPF RRLCKTLGAD ITCGEMAMCS NLLQGQASEW  360
ALLRRHSSED LFGVQICGPY PDTIARTVEL IDNECLVDFI DINMGCPIDI VVNKGAGSSL  420
LTKPMRIKSI VQAASTVTEK PLTVKVRTAF FEGRNRADSI VSDIYDWGAS ALTIHGRSRQ  480
QRYSKLADWD YIYQCAQKAP DYLHVIGNGD VFSFTDWNKH LSDCSKISTC MIARGALIKP  540
WIFTEIKEQK HWDISSGERL NILKDFVRFG LEHWGSDSKG VETTRYFLLE WLSYTCRYIP  600
VGLLDVIPQR LNWRPPSYCG RDDLETMMAS DSAADWIRIS EMLLGKVPEG FKFAPKHKSN  660
AYDRAENG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	3e-29	313	560	27	266	tRNA-dihydrouridine synthase B
6ei9_B	3e-29	313	560	27	266	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462943402

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM399264	0.0	KM399264.1 Sorghum bicolor FMN-linked oxidoreductases superfamily protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824565.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2
Swissprot	Q7XT07	0.0	DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A3L6QB05	0.0	A0A3L6QB05_PANMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	Si009538m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10322	25	27

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]