PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462943402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 668aa MW: 74578.6 Da PI: 7.3639 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.5e-06 | 83 | 95 | 14 | 26 |
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 CkyG++C+F+H+ 462943402 83 SCKYGASCRFSHD 95 7***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.366 | 66 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.193 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.20.20.70 | 3.4E-74 | 312 | 555 | IPR013785 | Aldolase-type TIM barrel |
SuperFamily | SSF51395 | 1.67E-65 | 316 | 629 | No hit | No description |
CDD | cd02801 | 5.82E-95 | 316 | 548 | No hit | No description |
Pfam | PF01207 | 9.5E-54 | 319 | 553 | IPR001269 | tRNA-dihydrouridine synthase |
PROSITE pattern | PS01136 | 0 | 400 | 418 | IPR018517 | tRNA-dihydrouridine synthase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008033 | Biological Process | tRNA processing | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0017150 | Molecular Function | tRNA dihydrouridine synthase activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MTRAVTAASQ PTPEELVARA VAPVKPAFLR PPPVREAPKE DGKAAGVTAE KKSKRQLKRE 60 RQQEKRSTSH LCIEVGKSGN VDSCKYGASC RFSHDINAYL AQKPADLEGT CPFASSGMLC 120 PYGLTCRYLS THNNQSPENC PEGNREINSF NKDTQKLLWK NKYDFPKASA QIKLLGLKDI 180 KKNKVNSAND DQKADIDSPD KSCELNGNDK SESPCNTSGN VEPESNLCKE TDNSEGELLV 240 AKSVQLVEPR PLKKSKVEVD ETQNHGAGIH DNEAEPEDQK LSNGLEVPSN NQSSCRIDLI 300 TAPHLREKKI IDFREKLYLA PLTTVGNLPF RRLCKTLGAD ITCGEMAMCS NLLQGQASEW 360 ALLRRHSSED LFGVQICGPY PDTIARTVEL IDNECLVDFI DINMGCPIDI VVNKGAGSSL 420 LTKPMRIKSI VQAASTVTEK PLTVKVRTAF FEGRNRADSI VSDIYDWGAS ALTIHGRSRQ 480 QRYSKLADWD YIYQCAQKAP DYLHVIGNGD VFSFTDWNKH LSDCSKISTC MIARGALIKP 540 WIFTEIKEQK HWDISSGERL NILKDFVRFG LEHWGSDSKG VETTRYFLLE WLSYTCRYIP 600 VGLLDVIPQR LNWRPPSYCG RDDLETMMAS DSAADWIRIS EMLLGKVPEG FKFAPKHKSN 660 AYDRAENG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ei9_A | 3e-29 | 313 | 560 | 27 | 266 | tRNA-dihydrouridine synthase B |
6ei9_B | 3e-29 | 313 | 560 | 27 | 266 | tRNA-dihydrouridine synthase B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462943402 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM399264 | 0.0 | KM399264.1 Sorghum bicolor FMN-linked oxidoreductases superfamily protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824565.1 | 0.0 | tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2 | ||||
Swissprot | Q7XT07 | 0.0 | DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like | ||||
TrEMBL | A0A3L6QB05 | 0.0 | A0A3L6QB05_PANMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)] | ||||
STRING | Si009538m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10322 | 25 | 27 |
Publications ? help Back to Top | |||
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