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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462941547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8923.87 Da PI: 5.6357 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 33 | 73 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+ E++l + + + G++ W++Ia +++ gRt++++ +w+k 462941547 33 FTEAEEDLVFRMHGLVGNR-WELIAGRIP-GRTAEEVEIFWYK 73 8******************.*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.4E-7 | 29 | 77 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.249 | 33 | 75 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.09E-8 | 33 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 33 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.72E-8 | 33 | 73 | No hit | No description |
Pfam | PF00249 | 1.6E-8 | 33 | 73 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MDNSSGSQDK KSKADGRHGA KEIDSTAQNF IDFTEAEEDL VFRMHGLVGN RWELIAGRIP 60 GRTAEEVEIF WYKKHQDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462941547 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458170.1 | 6e-38 | MYB-like transcription factor ETC3 | ||||
TrEMBL | A0A2R4QNC5 | 7e-38 | A0A2R4QNC5_9POAL; MYB transcription factor | ||||
STRING | Pavir.Eb02165.1.p | 8e-38 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5275 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 7e-23 | MYB_related family protein |