PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462941272
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 258aa    MW: 29051.3 Da    PI: 9.9266
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462941272genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.5e-17158248199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+k++++s+v +  +l lp  f+++++ k  ++  +tl de+g++++ ++    ++++  l++GW +F+ ++g+++gD  vF+l+++++f  +v+++r+
  462941272 158 FVKAMLHSHVVRGFWLGLPSYFCDTYMPK--QDSIITLVDEKGEEFDTNY--LAYKKG--LSGGWAGFALSHGIRDGDATVFQLIKSTTF--KVHIIRA 248
                89************************744..5669***************..555555..9***********************997777..9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-19149248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-22151247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-24156247No hitNo description
PfamPF023625.5E-15158248IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28158249IPR003340B3 DNA binding domain
SMARTSM010192.6E-17158249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGAVAKQGMS AYEAARERTV QENKRKIEEL NLYHLSAAIK EAPKTPSPMV MIYSRSVLSF  60
PLSALRGRRS KQKRRRIIDA AVVAPSPIRR SRRLAKLPEV QYAEIGPHTS ERMTRSPRKP  120
TDSIYLARYG SISMEARLEA TRKAEELESQ MDPEIPSFVK AMLHSHVVRG FWLGLPSYFC  180
DTYMPKQDSI ITLVDEKGEE FDTNYLAYKK GLSGGWAGFA LSHGIRDGDA TVFQLIKSTT  240
FKVHIIRAAI DDDSEVAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773RRSKQKR
27276KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMap462941272
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797698.11e-142B3 domain-containing protein Os03g0184500-like
SwissprotQ10QS91e-133Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A2T7CGW71e-141A0A2T7CGW7_9POAL; Uncharacterized protein
STRINGSi037266m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]