PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462941169
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 669aa    MW: 71730.9 Da    PI: 5.7807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462941169genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001524549123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++C+  +C ++F++k +L +H ++ +
  462941169 524 FECNidYCRMTFKTKTELSVHNKNmC 549
                89*******************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035531524546IPR015880Zinc finger, C2H2-like
SMARTSM003553.2547571IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24547576IPR007087Zinc finger, C2H2
PROSITE patternPS000280549571IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4552578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.13E-10563605No hitNo description
SMARTSM003550.0092577601IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034577606IPR007087Zinc finger, C2H2
PROSITE patternPS000280579601IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-7579600IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.53E-7595630No hitNo description
Gene3DG3DSA:3.30.160.609.3E-8601630IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035552607629IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MRIRRYAARL LSSSATITNP ASPPPQPAAA WLHDAATPPR RSGNPTFYIA SLFCCVAVMQ  60
EAPDAVKHKG HIACLVPESE VKSGELVGLA QGLPAPEAKK CKADHEPPVN EADEGLVVTN  120
GGSVVTEAAA KPEDANGATL VTKADVNLAF KAGPFVTNDV TIDQEVKCGG SLVTDTIKTD  180
VTGGDSLVNG STTELEVLKV APVSNGVVTD PEVTERVPLE NRAATLPGAT GIEPDVTGGC  240
SIMNESGAEL GVIRTASLVY EASTEPELTD KVSLMTKAAA DAGVTITVPE VTRTGYLGNE  300
GAAGLEVARG ASPVHEAAEL EATEEDSIAS QADREADDSG RVSCSVEDDP ALDEPQPPNS  360
DMTGKVQVGN AGETVATAME PSQCDATDVD GSVGSTSDGP VGAKDSIVEG GVAHDKSVTP  420
SVSCTLGVVA RSIGRSERTD VICYTRRRGK RKLDLLEVKT ENIDLEDRVI SDRFEENKTL  480
KSNGPCESMI SRAGSVDVKL ADIKRELMEN SPARKVKKMK KNKFECNIDY CRMTFKTKTE  540
LSVHNKNMCT VKSCSRHFRS HKYLRRHQTV HNDDMPYKCP WEGCSIAFKW PWDRAEHFQV  600
HAGVKPYKCM TPGCSKIYKF VSDFTRHRRS LGKARQALLE DPNPPYFCEK NSSALKMGGH  660
HMFDAIICG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A9e-4252463423133Lysine-specific demethylase REF6
6a58_A9e-4252463423133Lysine-specific demethylase REF6
6a59_A9e-4252463423133Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445451RRRGKRK
2445452RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462941169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792345.10.0uncharacterized protein LOC112873563
TrEMBLA0A3L6SAH40.0A0A3L6SAH4_PANMI; Zinc finger protein GLI1-like isoform X2
STRINGPavir.J38242.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.12e-39relative of early flowering 6