PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940887
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 857aa    MW: 93206.1 Da    PI: 7.0819
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940887genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1100.81.4e-3171173291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+             + + rrtra+tr+gCka+++vkk+++g+w vtkle+ HnH+
  462940887  71 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradagtgdedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWTVTKLETTHNHP 170
                *********************************************************999999************************************* PP

       FAR1  89 lap 91 
                l+p
  462940887 171 LVP 173
                986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2971173IPR004330FAR1 DNA binding domain
PfamPF044343.8E-9415462IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.546427463IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-8438465IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MERGAGSEQG SPESEMGDGD NDSVGYGAEM EVDAGSGSAS ASAYAARAGV YDGVDPFEGM  60
EFDDEEDAWT FYNVYAHRVG FSTRISVMHR SRRDGSVMSR QFVCAKEGFR TYRGKNEVAR  120
ADAGTGDEDS GRGRRTRAVT RVGCKAMIRV KKQDNGRWTV TKLETTHNHP LVPANQSHCL  180
RPHKPLSECG KQRPFGGHRN GGMPLAIEPP STPLTPPVHR TSIPQVVPRL RFCKWHIINE  240
VQDKLSHFLN AFPSFHEEFV NCIDMSETAD EFEANWKALI SKVGSQNTEW LDMMYNCRHQ  300
WVPLYLRDTF FGDVSLQQQC ASRSSLFEGY ISAKTDSQSF IQQYEKALDC CYEKEVKEEF  360
ETKYSPPDFK TSSPIEKQGA EVYTRSMFLK FQQELIDASV CTAGMIKEEG NVSIYKVTKS  420
EVSERHFTVH FISSESSATC SCRMFEYLGI VCQHILTVFG ARGVSALPAQ YFVKRWTKDA  480
MDRSTSKKDD KNSRVQEAKD EQKSSAEDGV HSPSWRYNSL SREALRFAEE GASSLEVYIV  540
AMQALQEAAN RVNMAKRGIG QVAPLAVMPI AAQPPESFGQ IHEISSGKQK KRRSSSNNSK  600
ENFTSNQLMY VQQPVNFLFV APGSSSALPG PNHLVAAAPV SLSTQYGQTS GANRLVDNRA  660
SPAYVAFDKF SGFPEQNASA PSSANVEGGE TKSTGAAAQI KESHELSQAN GNSGCSVNAL  720
NSNAAPQLVT VPIGLCPSMD GSKISPAGMN SLNPGDVSSN GNVPLGLHPA QSSAQQPATH  780
SQTKTPDSID SQGNPEGSSI RAAAIAAGAR IASASDAASI IKAAQSKGAI HIKPGENLPN  840
YLKPLTPKPL TSLPPYA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940887
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794565.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1E5WFJ10.0A0A1E5WFJ1_9POAL; Protein FAR1-RELATED SEQUENCE 5
STRINGSi034021m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-82FAR1-related sequence 5