 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
462940225 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
WRKY |
| Protein Properties |
Length: 587aa MW: 62204.8 Da PI: 7.876 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462940225 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 98.2 | 5.4e-31 | 283 | 340 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g+Hnh+k
462940225 283 EDGYSWRKYGQKQVKHSEYPRSYYKCTHPNCQVKKKVERSH-EGHVTEIIYKGTHNHPK 340
8****************************************.***************85 PP
|
| 2 | WRKY | 105.1 | 3.8e-33 | 423 | 481 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
462940225 423 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 481
59********************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 587 aa
Download sequence Send
to blast |
MDGGPEGLLP GALTGGFPPD TKGGDGNEGA KAGFGEHGFS VATSSSQEGG RSLPGTPQFG 60
QKAGAGCSLA ERMQARAGFR VPKLNMPFST AAGTDTAVSG APSPYLTIPP GLSPATLLES 120
PVFLSNTMGQ ASPTTGKLFM LGGTNDSNPN RFEGPPQGDG PGAFSFKPLD LRSSHCIADE 180
KKESSRNNQH SSLPSTQVSI KTETKVQTVQ EASMPRQLNQ QQLNDGQTTL KSSSHGSNKL 240
SRLAPDTAAV TEHVSPPDHG QPAEEGEARG DFTALATAAA PAEDGYSWRK YGQKQVKHSE 300
YPRSYYKCTH PNCQVKKKVE RSHEGHVTEI IYKGTHNHPK PAQSRRPGVP PGVDVTSAVS 360
DEVDGDRVTH GSLSQGSAGG AEGDELESKR RKLESYAIDM TGASRAVREP RVVIQTTSEV 420
DILDDGYRWR KYGQKVVKGN PNPRSYYKCT HPGCSVRKHV ERASHDLKSV ITTYEGKHNH 480
EVPAARNSGH PTSAASGGAA AMADFILTAN TYGFTQMASK PRHCPSLSSS SRRTNADFDS 540
SSPVRAEQGV AAASVPFDDL CGSLPALATL SLLENALRSN DIETVVF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT066094 | 1e-129 | BT066094.1 Zea mays full-length cDNA clone ZM_BFb0304M03 mRNA, complete cds. |
| GenBank | EU947403 | 1e-129 | EU947403.1 Zea mays clone 342377 mRNA sequence. |
| GenBank | KJ728172 | 1e-129 | KJ728172.1 Zea mays clone pUT6442 WRKY transcription factor (WRKY72) mRNA, partial cds. |
