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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462939980 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 245aa MW: 27301.3 Da PI: 8.3057 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462939980 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 76.5 | 1.9e-24 | 45 | 91 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
rien rqvtf+kRr+g+lKKA ELSvLCda + +iifs +gkly+
462939980 45 RIENPVHRQVTFCKRRAGLLKKARELSVLCDAHIGIIIFSAHGKLYD 91
8********************************************97 PP
|
| 2 | K-box | 28.5 | 6.5e-11 | 124 | 195 | 16 | 86 |
K-box 16 slqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86
+qe L++ei+ Lq+ +R + G+ + ++++eL+ Le+ Le + +iRs K+ +l++ e lq+k e
462939980 124 DPKQETMVLQQEINLLQKGLRYIYGNRANeHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 195
5689999******************998626************************************99765 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 29.352 | 36 | 96 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 8.1E-35 | 36 | 95 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.19E-27 | 36 | 111 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.80E-39 | 37 | 114 | No hit | No description |
| PRINTS | PR00404 | 5.2E-26 | 38 | 58 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 38 | 92 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.0E-23 | 45 | 90 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.2E-26 | 58 | 73 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.2E-26 | 73 | 94 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 8.549 | 122 | 212 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 6.0E-12 | 125 | 192 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
PRVEAQGTAA TSKLVQTSGR LSAGGRGRRS YLVTSMARGK VQLRRIENPV HRQVTFCKRR 60
AGLLKKAREL SVLCDAHIGI IIFSAHGKLY DLATTGTMEE LIERYKTASG EAQQGDGCGD 120
QIMDPKQETM VLQQEINLLQ KGLRYIYGNR ANEHMTVEEL NALERYLEIW MYNIRSAKEG 180
MLKAANEILQ EKIVEQSGLL DVGMMVADQQ NGHFSTVPLI EEITNPLTIL SGYSSCRGSE 240
MGYSF
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
| UniProt | Probable transcription factor. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Lee S, et al.
Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
Plant Physiol., 2008. 147(1): p. 156-68
[PMID:18354041] - Khong GN, et al.
OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
Plant Physiol., 2015. 169(4): p. 2935-49
[PMID:26424158]
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