PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462939773
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 315aa    MW: 34601.2 Da    PI: 6.5985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462939773genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-103685154
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               r++ +  rE+ RRd++N+ f+eL   l ++     +K++Ka+iL  +++ +k+L
  462939773 36 RKVQKADREKMRRDKLNEQFQELGNALDPD----RPKNDKATILGDTIQMLKDL 85
               5677889********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1434106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1434108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.0783585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-83689No hitNo description
PfamPF000103.0E-83685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-84191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDPRGHHPPE DGFFLTRDVD PSQRTECKGQ GSTAARKVQK ADREKMRRDK LNEQFQELGN  60
ALDPDRPKND KATILGDTIQ MLKDLTSQVN KLKAEYASLS EEAHELTQEK NELRDEKASL  120
KSDVDNLNNQ YQQRMRVLYP WAGMEPSVVI GPPAPYPYPV PVHIPSGAVP MHPQMQAYPF  180
FRSQTSGTMP NPYMSYTQPC HPPTDQPSNQ FNTPVPHSSS HQSNSPAQDC RSKSSTLQQA  240
SCRVSAGDVA TDLELKTPGS SAPSHSDTAN KDSSSDSKTK KQCLKQINGS TLTEDSSSSR  300
CSSSGPPDVS NSVDG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462939773
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815621.11e-180transcription factor bHLH121 isoform X3
SwissprotQ9LT238e-68BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2S3GP781e-179A0A2S3GP78_9POAL; Uncharacterized protein
STRINGSi017804m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.17e-67bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]