PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462939417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Dof | ||||||||
Protein Properties | Length: 282aa MW: 29670.2 Da PI: 8.7516 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.1 | 9.2e-39 | 54 | 115 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCds+ntkfCyynny++sqPryfCk+Crr+Wt+GG+lrnvPvGg+rrknk+sss 462939417 54 REDALKCPRCDSSNTKFCYYNNYNMSQPRYFCKTCRRFWTQGGTLRNVPVGGARRKNKRSSS 115 57899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 50 | 112 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-33 | 56 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.733 | 58 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 60 | 96 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MMTASKKSKS TAASAHQHQQ QVGVDTIEEA RDVNQALQQQ AASGDGVHMP QPQREDALKC 60 PRCDSSNTKF CYYNNYNMSQ PRYFCKTCRR FWTQGGTLRN VPVGGARRKN KRSSSSSLAS 120 ASSSNTTTMA INNNIPTLSA LTSFPNVLPT FMSTGFEFSL PLAPPLLLSG GVAPAPTPAL 180 APGGSMMTTP SFLDLLRGGA LDREGNSSNR MEMSLPPLFG FSVMQDGIMG DHHGVAPIGG 240 GSAIATTQLG GQHQLAGAQH GHNKDDGSAA GSDGLQVGAN QQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462939417 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980592.1 | 2e-53 | dof zinc finger protein PBF | ||||
Swissprot | O24463 | 6e-53 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | A0A2R4QNH9 | 1e-52 | A0A2R4QNH9_9POAL; Dof zinc finger protein PBF |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 7e-34 | TARGET OF MONOPTEROS 6 |
Publications ? help Back to Top | |||
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