PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462939384
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 322aa    MW: 34376.2 Da    PI: 5.5721
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462939384genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.5e-26120180259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dDg++WrKYGqK++ g+++pr+Y+rCt++   gC++ k+v+r + dp +++++Y+g+H++ 
  462939384 120 DDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCMASKQVQRVDGDPLLFDVVYHGDHTCA 180
                8***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-26112181IPR003657WRKY domain
PROSITE profilePS5081120.794114177IPR003657WRKY domain
SuperFamilySSF1182902.22E-24118181IPR003657WRKY domain
SMARTSM007741.4E-39119181IPR003657WRKY domain
PfamPF031064.8E-25120179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEGMAEERCA LVGELVQVLE MVRQLDAHMA GGEERCRALV ATMRASIDRS VLIARSCCAE  60
PGRVFGGHHQ PESPPSGGSD QAGDSRGRGN AAGHCKRRKG LPRWTAKFRV PDANLEATPD  120
DGFSWRKYGQ KDILGAKYPR AYFRCTHRHT QGCMASKQVQ RVDGDPLLFD VVYHGDHTCA  180
QAQGAARPAG NQTTTEHSQP QPGPEQLAVA SPLLERAVLP FPLPSSNNKP AAPGANDDNG  240
CEASSGFAAA GVTASSFMLS GTQETPEESH LVSGGSNYTV AGVRNVADDV ELASATNSPI  300
GDMDFMFQLD DAADFLENAN YF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21120179968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462939384
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769261e-79AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969356.11e-102probable WRKY transcription factor 53
TrEMBLK3XJY01e-101K3XJY0_SETIT; Uncharacterized protein
STRINGSi002203m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-42WRKY family protein