PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 263aa MW: 28779.2 Da PI: 9.5227

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462938539	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.6	3.7e-12	163	194	25	56
--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRakek 56 p ++++ eLA+++gL+ rqV vWFqNrRa+ k 462938539 163 PFQAQKHELARRVGLSARQVEVWFQNRRARTK 194 667899************************98 PP
2	HD-ZIP_I/II	85.9	5.3e-28	166	229	27	90
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+++ +eLr++ 462938539 166 AQKHELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDSLTDENARLRRDLAELRAS 229 69***********************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.511	117	196	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.15E-12	119	205	IPR009057	Homeodomain-like
SMART	SM00389	4.7E-9	119	200	IPR001356	Homeobox domain
CDD	cd00086	2.38E-8	121	197	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-15	121	199	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-9	163	194	IPR001356	Homeobox domain
PRINTS	PR00031	7.9E-6	167	176	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	171	194	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.9E-6	176	192	IPR000047	Helix-turn-helix motif
SMART	SM00340	1.6E-16	196	239	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.2E-8	196	228	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MSSLTTAGSS MEECSVEEFD TRLSLEVGGT SSRPSPPQRQ TVQLFGELIS PQEAALQDGD 60 HRELRAPAGK KKRTESGVVT FAAVAVSGGS RHNKKARTST QQAEEDGDRR SSQSDGGAGS 120 RKKLRLTSAQ ATMLEDSFRA HNILSHLFTF QSSDHSDRDR SLPFQAQKHE LARRVGLSAR 180 QVEVWFQNRR ARTKLKQTEV DCELLRRWCD SLTDENARLR RDLAELRASA ASTGRIPAAA 240 AAVRVVCPSC CDKKIAIVAG DVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	125	SRKKLRL
2	188	196	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462938539

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951890.1	3e-75	putative homeobox-leucine zipper protein HOX26
Swissprot	Q67UX6	3e-50	HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBL	A0A3L6RW69	2e-74	A0A3L6RW69_PANMI; Putative homeobox-leucine zipper protein HOX26
STRING	Si018305m	1e-74	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-28	homeobox-leucine zipper protein 17