PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462938428

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 1446aa MW: 159874 Da PI: 6.6858

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462938428	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.5	1.2e-18	359	458	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++lv+++ 462938428 359 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKLVMGF 456 99************************555567778***********99899999999.*******************887.777778777 PP E- CS B3 97 fr 98 ++ 462938428 457 RK 458 76 PP
2	B3	58.5	1.2e-18	859	958	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++lv+++ 462938428 859 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKLVMGF 956 99************************555567778***********99899999999.*******************887.777778777 PP E- CS B3 97 fr 98 ++ 462938428 957 RK 958 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.7E-31	351	468	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.23E-21	356	459	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.23E-23	357	458	No hit	No description
Pfam	PF02362	8.4E-16	359	458	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.589	359	460	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-22	359	459	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.7E-31	851	968	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.23E-21	856	959	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.23E-23	857	958	No hit	No description
Pfam	PF02362	8.4E-16	859	958	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.589	859	960	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-22	859	959	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	15.042	1120	1170	IPR011124	Zinc finger, CW-type
Pfam	PF07496	4.7E-13	1125	1167	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1446 aa Download sequence Send to blast
MAAKRCMNPA CGAPAPGPGG GGDWRKGWPL RSGAFALLCD KCGLAYEQLV FCDIFHQKES 60 GWRDCSFCAK RLHCGCIASK NSYDLLDGGG VQCVTCMKNS AAHSVSGQGA PKLFPSQSSL 120 RFLGKSDELL LGRKFDQSPS MMVDPRNDDI TIINKNSHPF MLRNIEVGQS SSFLRQKEIE 180 NGPRQQIKWE QATLSIGDIG KMPFLTRTQS ALESPQCVRR DDSKDPTTDS TTSESLSEAC 240 LSMSLSIANN GSKMEATSTV ERPILSPTTA MAEGRELTAS LSPFQHAQRA RNFLTRPPRV 300 GEGAAFDPTR DVFSHLRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD SNSTIVPLFE 360 KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGRPLTIQD ARGKEWHFQF RFWPNNNSRM 420 YVLEGVTPCI QSLQLQAGDT VTFSRIEPGG KLVMGFRKAT NTVSLPDSQI SAIANGSLLS 480 ETLFSSTNEN LSVVSGYPGF FQSIKGAADL HSSSLYDHHV NSADGDVSWL KTDKFGSRPD 540 EGSLRFLQKR SRNIGSKSRR FLMDAEDALE LKLTWEEAQE LLRPAPTSKP TVVTIEDYEF 600 EEYDVSGQGT PKLFPSQNSL QFFGKSDELL LGRKFDQSPS MMVDPRNDDI TIINKNSHPF 660 MLRNIEVGQS SSFLRQKEIE NGPRQQIKWE QATLSIGDIG KMPFLTRTQS ALESPQCVRR 720 DDSKDPTTDS TTSESLSEAC LSMSLSIANN GSKMEATSTV ERPILSPTTA MAEGRELTAS 780 LSPFQHAQRA RNFLTRPPRV GEGAAFDPTR DVFSHLRVAR PPAEGRGRNQ LLPRYWPRIT 840 DQELQQISGD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGRPLTIQD 900 ARGKEWHFQF RFWPNNNSRM YVLEGVTPCI QSLQLQAGDT VTFSRIEPGG KLVMGFRKAT 960 NTVSLPDSQI SAIANGSLLS ETLFSSANEN LSVVSGYPGF IQSIKGAADL HSSSLYDHHV 1020 NSADGDVSWL KTDKFGSRPD EGSLQFLQKR SRNIGSKSRR FLMDAEDALE LKLTWEEAQE 1080 LLRPAPTAKP TVVTIEDYEF EEYDEPPVFA KRSIFTVRAT GEQDQWIQCD DCSKWRRLPL 1140 NVIVASKWTC TDNSWDPKSS SCSAPEELTP KELQSVLQQY EEMRRRKGSS YGLKLNVAEM 1200 DASSLDALAT AAVYGEAGNQ GTAVATTTKH PRHRPGCTCI VCIQPPSGKG PKHNPSCTCN 1260 VCMTVKRRFK TLMMRKKQRQ SEREEAEASK KIQWMNRDEP EGSSLSRSPQ TLDTTRDSDV 1320 TMFDKVPETN KGHIDLNFHP TVRDDQEQHG SQPRPVSMMG LLEVATRPLE NYMKQNGLTS 1380 LAGEQGGSPS TVTAPPAPVE SEERTSNENR VASVEREREP DAMAIDEAGE NQQEKASDDA 1440 VAATAT

Sequence ? help Back to Top

Protein Sequence Length: 1446 aa Download sequence Send to blast

MAAKRCMNPA CGAPAPGPGG GGDWRKGWPL RSGAFALLCD KCGLAYEQLV FCDIFHQKES  60
GWRDCSFCAK RLHCGCIASK NSYDLLDGGG VQCVTCMKNS AAHSVSGQGA PKLFPSQSSL  120
RFLGKSDELL LGRKFDQSPS MMVDPRNDDI TIINKNSHPF MLRNIEVGQS SSFLRQKEIE  180
NGPRQQIKWE QATLSIGDIG KMPFLTRTQS ALESPQCVRR DDSKDPTTDS TTSESLSEAC  240
LSMSLSIANN GSKMEATSTV ERPILSPTTA MAEGRELTAS LSPFQHAQRA RNFLTRPPRV  300
GEGAAFDPTR DVFSHLRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD SNSTIVPLFE  360
KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGRPLTIQD ARGKEWHFQF RFWPNNNSRM  420
YVLEGVTPCI QSLQLQAGDT VTFSRIEPGG KLVMGFRKAT NTVSLPDSQI SAIANGSLLS  480
ETLFSSTNEN LSVVSGYPGF FQSIKGAADL HSSSLYDHHV NSADGDVSWL KTDKFGSRPD  540
EGSLRFLQKR SRNIGSKSRR FLMDAEDALE LKLTWEEAQE LLRPAPTSKP TVVTIEDYEF  600
EEYDVSGQGT PKLFPSQNSL QFFGKSDELL LGRKFDQSPS MMVDPRNDDI TIINKNSHPF  660
MLRNIEVGQS SSFLRQKEIE NGPRQQIKWE QATLSIGDIG KMPFLTRTQS ALESPQCVRR  720
DDSKDPTTDS TTSESLSEAC LSMSLSIANN GSKMEATSTV ERPILSPTTA MAEGRELTAS  780
LSPFQHAQRA RNFLTRPPRV GEGAAFDPTR DVFSHLRVAR PPAEGRGRNQ LLPRYWPRIT  840
DQELQQISGD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGRPLTIQD  900
ARGKEWHFQF RFWPNNNSRM YVLEGVTPCI QSLQLQAGDT VTFSRIEPGG KLVMGFRKAT  960
NTVSLPDSQI SAIANGSLLS ETLFSSANEN LSVVSGYPGF IQSIKGAADL HSSSLYDHHV  1020
NSADGDVSWL KTDKFGSRPD EGSLQFLQKR SRNIGSKSRR FLMDAEDALE LKLTWEEAQE  1080
LLRPAPTAKP TVVTIEDYEF EEYDEPPVFA KRSIFTVRAT GEQDQWIQCD DCSKWRRLPL  1140
NVIVASKWTC TDNSWDPKSS SCSAPEELTP KELQSVLQQY EEMRRRKGSS YGLKLNVAEM  1200
DASSLDALAT AAVYGEAGNQ GTAVATTTKH PRHRPGCTCI VCIQPPSGKG PKHNPSCTCN  1260
VCMTVKRRFK TLMMRKKQRQ SEREEAEASK KIQWMNRDEP EGSSLSRSPQ TLDTTRDSDV  1320
TMFDKVPETN KGHIDLNFHP TVRDDQEQHG SQPRPVSMMG LLEVATRPLE NYMKQNGLTS  1380
LAGEQGGSPS TVTAPPAPVE SEERTSNENR VASVEREREP DAMAIDEAGE NQQEKASDDA  1440
VAATAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-66	337	961	2	126	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1265	1276	KRRFKTLMMRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462938428

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062927	0.0	BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds.
GenBank	JX428502	0.0	JX428502.1 Zea mays subsp. mays clone pUT3100 ABI32 ABI3VP1 type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958699.1	0.0	B3 domain-containing protein Os07g0679700
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	K3ZQF4	0.0	K3ZQF4_SETIT; Uncharacterized protein
STRING	Pavir.Ba00225.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6519	37	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-176	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]