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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462938408 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
bZIP |
| Protein Properties |
Length: 247aa MW: 26762 Da PI: 6.8109 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462938408 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 31.3 | 4.5e-10 | 43 | 90 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l
462938408 43 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 90
9****************************************9888765 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005829 | Cellular Component | cytosol |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MGGGGGGPGG QQDGAGGVFG EVMEAKKAMS SEQLAELAAI DPKRAKRILA NRQSAARSKE 60
RKARYITELE RKVQTLQTEA TTLSAQLTLF QRDTTGLSAE NAELKIRLQA MEQQAQLRDA 120
LNDALKQEVE RLKIATGEMT KSNESYNVGM QHVTYSPSFF QLSEQQAILH HGNIQLPPHF 180
QPPPNVPTHQ MLSHPNSLSD MMQQDSLGRF QGLDIGKGQV AVKSEAEVVV KSEGSSISAG 240
ESNSTFS
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
[PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
Biochem. J., 2007. 405(2): p. 243-9
[PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
[PMID:19104064]
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